Gene annotation
Transcriptome id Sobic.009G125100.1
Synonym EMB2733, ESP3, Sb09g019260
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1Z5R2D1
Pfam PF00270 PF00271 PF04408 PF07717
Panther DB PTHR18934 PTHR18934:SF117
NCBI CDD -
KEGG Orthology K12813; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT2G35340 : helicase domain-containing protein
RAP-DB (Rice) LOC_Os05g32370.1 : ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK06502
Barley HORVU1Hr1G056400.1 , HORVU1Hr1G056370.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G042800 expressed protein -
2 Sobic.004G059200 inactive receptor kinase At2g26730 precursor, putative, expressed -
3 Sobic.009G021000 exocyst complex component 6, putative, expressed -
4 Sobic.004G348000 white-brown complex homolog protein, putative, expressed -
5 Sobic.006G066050 - -
6 Sobic.002G087600 OsFBX231 - F-box domain containing protein, expressed -
7 Sobic.007G161100 ENTH domain containing protein, expressed -
8 Sobic.001G272100 expressed protein -
9 Sobic.002G015200 OsFBO11 - F-box and other domain containing protein, expressed -
10 Sobic.001G196400 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
11 Sobic.010G026200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
12 Sobic.003G054800 expressed protein -
13 Sobic.001G251000 - -
14 Sobic.004G327000 STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
15 Sobic.003G307500 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
16 Sobic.007G112832 - -
17 Sobic.002G406801 - -
18 Sobic.003G302532 - -
19 Sobic.005G039000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
20 Sobic.010G217700 clathrin assembly protein, putative, expressed -


Gene co-expression network
sample Sobic009G125100 Sobic009G125100 Sobic009G042800 Sobic009G042800 Sobic009G125100--Sobic009G042800 Sobic004G059200 Sobic004G059200 Sobic009G125100--Sobic004G059200 Sobic009G021000 Sobic009G021000 Sobic009G125100--Sobic009G021000 Sobic004G348000 Sobic004G348000 Sobic009G125100--Sobic004G348000 Sobic006G066050 Sobic006G066050 Sobic009G125100--Sobic006G066050 Sobic002G087600 Sobic002G087600 Sobic009G125100--Sobic002G087600 Sobic007G161100 Sobic007G161100 Sobic009G125100--Sobic007G161100 Sobic001G272100 Sobic001G272100 Sobic009G125100--Sobic001G272100 Sobic002G015200 Sobic002G015200 Sobic009G125100--Sobic002G015200 Sobic009G042800--Sobic009G021000 Sobic009G042800--Sobic006G066050 Sobic009G042800--Sobic009G125100 Sobic009G042800--Sobic007G161100 Sobic009G042800--Sobic004G059200 Sobic009G042800--Sobic002G015200 Sobic009G042800--Sobic002G087600 Sobic003G054800 Sobic003G054800 Sobic009G042800--Sobic003G054800 Sobic004G327000 Sobic004G327000 Sobic009G042800--Sobic004G327000 Sobic004G059200--Sobic007G161100 Sobic010G026200 Sobic010G026200 Sobic004G059200--Sobic010G026200 Sobic004G059200--Sobic004G327000 Sobic004G160000 Sobic004G160000 Sobic004G059200--Sobic004G160000 Sobic006G018701 Sobic006G018701 Sobic004G059200--Sobic006G018701 Sobic002G406801 Sobic002G406801 Sobic004G059200--Sobic002G406801 Sobic004G059200--Sobic006G066050 Sobic009G103650 Sobic009G103650 Sobic004G059200--Sobic009G103650 Sobic004G059200--Sobic009G021000 Sobic009G021000--Sobic006G066050 Sobic009G021000--Sobic004G059200 Sobic009G021000--Sobic009G042800 Sobic009G021000--Sobic007G161100 Sobic009G021000--Sobic003G054800 Sobic009G021000--Sobic002G087600 Sobic009G021000--Sobic009G125100 Sobic009G021000--Sobic004G327000 Sobic009G021000--Sobic006G018701 Sobic004G348000--Sobic004G059200 Sobic001G251000 Sobic001G251000 Sobic004G348000--Sobic001G251000 Sobic004G348000--Sobic009G125100 Sobic004G060400 Sobic004G060400 Sobic004G348000--Sobic004G060400 Sobic004G348000--Sobic007G161100 Sobic009G176200 Sobic009G176200 Sobic004G348000--Sobic009G176200 Sobic005G200100 Sobic005G200100 Sobic004G348000--Sobic005G200100 Sobic005G039000 Sobic005G039000 Sobic004G348000--Sobic005G039000 Sobic001G196400 Sobic001G196400 Sobic004G348000--Sobic001G196400 Sobic006G066050--Sobic009G021000 Sobic006G066050--Sobic004G059200 Sobic006G066050--Sobic007G161100 Sobic006G066050--Sobic009G042800 Sobic006G066050--Sobic004G327000 Sobic006G066050--Sobic003G054800 Sobic006G066050--Sobic002G087600 Sobic006G066050--Sobic006G018701 Sobic006G066050--Sobic009G125100 Sobic002G087600--Sobic009G021000 Sobic002G087600--Sobic006G066050 Sobic002G087600--Sobic009G125100 Sobic007G127800 Sobic007G127800 Sobic002G087600--Sobic007G127800 Sobic002G087600--Sobic009G042800 Sobic002G087600--Sobic004G059200 Sobic002G087600--Sobic002G015200 Sobic002G087600--Sobic007G161100 Sobic002G087600--Sobic002G406801 Sobic007G161100--Sobic004G327000 Sobic007G161100--Sobic004G059200 Sobic007G161100--Sobic006G018701 Sobic007G161100--Sobic010G026200 Sobic007G161100--Sobic005G039000 Sobic007G161100--Sobic001G196400 Sobic007G161100--Sobic004G160000 Sobic003G208900 Sobic003G208900 Sobic007G161100--Sobic003G208900 Sobic007G161100--Sobic002G406801 Sobic001G272100--Sobic002G015200 Sobic001G272100--Sobic009G125100 Sobic007G112832 Sobic007G112832 Sobic001G272100--Sobic007G112832 Sobic007G209900 Sobic007G209900 Sobic001G272100--Sobic007G209900 Sobic001G272100--Sobic004G059200 Sobic001G272100--Sobic009G042800 Sobic003G066300 Sobic003G066300 Sobic001G272100--Sobic003G066300 Sobic001G272100--Sobic002G087600 Sobic001G538425 Sobic001G538425 Sobic001G272100--Sobic001G538425 Sobic002G015200--Sobic001G272100 Sobic002G015200--Sobic009G042800 Sobic002G015200--Sobic002G087600 Sobic002G015200--Sobic009G125100 Sobic003G307500 Sobic003G307500 Sobic002G015200--Sobic003G307500 Sobic002G015200--Sobic009G021000 Sobic002G015200--Sobic006G066050 Sobic002G015200--Sobic007G112832 Sobic002G015200--Sobic004G059200
Octagon: transcription factors


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