Gene annotation
Transcriptome id Sobic.010G217700.1
Synonym
Functional annotation clathrin assembly protein, putative, expressed
UniProt A0A194YKM5
Pfam PF07651
Panther DB PTHR22951 PTHR22951:SF21
NCBI CDD KOG0251; Clathrin assembly protein AP180 and related proteins, contain ENTH domain
KEGG Orthology -
Gene Ontology GO:0005543; phospholipid binding


Orthologs (automatic annotation)
TAIR AT4G25940 : ENTH/ANTH/VHS superfamily protein
RAP-DB (Rice) LOC_Os06g45050.1 : clathrin assembly protein, putative, expressed
MaizeGDB (Corn) Zm00025a041985
Brachypodium PNT75398 , PNT66001 , KQK05056 , KQJ93596 , KQK16954 , KQK16955
Barley HORVU7Hr1G109970.28 , HORVU7Hr1G109970.29 , HORVU7Hr1G109970.20 , HORVU7Hr1G109970.22 , HORVU7Hr1G109970.23 , HORVU7Hr1G109970.24 , HORVU7Hr1G109970.26 , HORVU7Hr1G109970.27 , HORVU7Hr1G109970.19 , HORVU7Hr1G109970.18 , HORVU7Hr1G109970.15 , HORVU7Hr1G109970.17 , HORVU7Hr1G109970.16 , HORVU7Hr1G109970.11 , HORVU7Hr1G109970.10 , HORVU7Hr1G109970.13 , HORVU7Hr1G109970.12 , HORVU1Hr1G078340.15 , HORVU1Hr1G078340.14 , HORVU1Hr1G078340.13 , HORVU1Hr1G078340.12 , HORVU1Hr1G078340.11 , HORVU1Hr1G078340.10 , HORVU7Hr1G109970.9 , HORVU7Hr1G109970.8 , HORVU7Hr1G109970.3 , HORVU7Hr1G109970.2 , HORVU7Hr1G109970.5 , HORVU7Hr1G109970.4 , HORVU7Hr1G109970.7 , HORVU7Hr1G109970.6 , HORVU6Hr1G030980.6 , HORVU6Hr1G030980.7 , HORVU6Hr1G030980.4 , HORVU6Hr1G030980.5 , HORVU6Hr1G030980.2 , HORVU6Hr1G030980.3 , HORVU6Hr1G030980.1 , HORVU6Hr1G030980.8 , HORVU6Hr1G030980.9 , HORVU1Hr1G078340.9 , HORVU1Hr1G078340.8 , HORVU1Hr1G078340.7 , HORVU1Hr1G078340.6 , HORVU1Hr1G078340.5 , HORVU1Hr1G078340.4 , HORVU1Hr1G078340.3 , HORVU1Hr1G078340.2 , HORVU1Hr1G078340.1 , HORVU7Hr1G109970.30
Wheat TraesCS7D02G476900 , TraesCS7D02G476900 , TraesCS1D02G375800 , TraesCS6A02G154100 , TraesCS7B02G393800 , TraesCS6D02G143700 , TraesCS1A02G369700 , TraesCS6B02G181800 , TraesCS7B02G393800 , TraesCS7B02G430700 , TraesCS7B02G430700 , TraesCS7B02G430700 , TraesCS1B02G388800 , TraesCS1B02G388800 , TraesCS7A02G490500 , TraesCS7A02G490500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G161100 ENTH domain containing protein, expressed -
2 Sobic.001G196400 transmembrane and coiled-coil domain-containing protein 4, putative, expressed -
3 Sobic.004G059200 inactive receptor kinase At2g26730 precursor, putative, expressed -
4 Sobic.003G208900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed -
5 Sobic.004G327000 STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
6 Sobic.004G348000 white-brown complex homolog protein, putative, expressed -
7 Sobic.006G232700 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
8 Sobic.003G317000 BTBN12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
9 Sobic.005G039000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
10 Sobic.010G026200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
11 Sobic.009G249400 protein kinase family protein, putative, expressed -
12 Sobic.003G305500 expressed protein -
13 Sobic.007G195000 cystathionin beta synthase protein, putative, expressed -
14 Sobic.004G160000 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
15 Sobic.004G042800 protein kinase domain containing protein, expressed -
16 Sobic.006G018701 - -
17 Sobic.003G343300 - -
18 Sobic.002G406801 - -
19 Sobic.010G030500 - -
20 Sobic.004G168150 - -


Gene co-expression network
sample Sobic010G217700 Sobic010G217700 Sobic007G161100 Sobic007G161100 Sobic010G217700--Sobic007G161100 Sobic001G196400 Sobic001G196400 Sobic010G217700--Sobic001G196400 Sobic004G059200 Sobic004G059200 Sobic010G217700--Sobic004G059200 Sobic003G208900 Sobic003G208900 Sobic010G217700--Sobic003G208900 Sobic004G327000 Sobic004G327000 Sobic010G217700--Sobic004G327000 Sobic004G348000 Sobic004G348000 Sobic010G217700--Sobic004G348000 Sobic006G232700 Sobic006G232700 Sobic010G217700--Sobic006G232700 Sobic003G317000 Sobic003G317000 Sobic010G217700--Sobic003G317000 Sobic005G039000 Sobic005G039000 Sobic010G217700--Sobic005G039000 Sobic007G161100--Sobic004G327000 Sobic007G161100--Sobic004G059200 Sobic006G018701 Sobic006G018701 Sobic007G161100--Sobic006G018701 Sobic010G026200 Sobic010G026200 Sobic007G161100--Sobic010G026200 Sobic007G161100--Sobic005G039000 Sobic007G161100--Sobic001G196400 Sobic004G160000 Sobic004G160000 Sobic007G161100--Sobic004G160000 Sobic007G161100--Sobic003G208900 Sobic002G406801 Sobic002G406801 Sobic007G161100--Sobic002G406801 Sobic001G196400--Sobic003G317000 Sobic001G196400--Sobic006G232700 Sobic001G196400--Sobic007G161100 Sobic001G196400--Sobic003G208900 Sobic001G196400--Sobic004G327000 Sobic004G042800 Sobic004G042800 Sobic001G196400--Sobic004G042800 Sobic003G305500 Sobic003G305500 Sobic001G196400--Sobic003G305500 Sobic001G196400--Sobic010G026200 Sobic001G196400--Sobic005G039000 Sobic004G059200--Sobic007G161100 Sobic004G059200--Sobic010G026200 Sobic004G059200--Sobic004G327000 Sobic004G059200--Sobic004G160000 Sobic004G059200--Sobic006G018701 Sobic004G059200--Sobic002G406801 Sobic006G066050 Sobic006G066050 Sobic004G059200--Sobic006G066050 Sobic009G103650 Sobic009G103650 Sobic004G059200--Sobic009G103650 Sobic009G021000 Sobic009G021000 Sobic004G059200--Sobic009G021000 Sobic003G208900--Sobic003G305500 Sobic003G208900--Sobic005G039000 Sobic003G343300 Sobic003G343300 Sobic003G208900--Sobic003G343300 Sobic003G343000 Sobic003G343000 Sobic003G208900--Sobic003G343000 Sobic007G195000 Sobic007G195000 Sobic003G208900--Sobic007G195000 Sobic007G185801 Sobic007G185801 Sobic003G208900--Sobic007G185801 Sobic003G208900--Sobic004G042800 Sobic007G139300 Sobic007G139300 Sobic003G208900--Sobic007G139300 Sobic006G062100 Sobic006G062100 Sobic003G208900--Sobic006G062100 Sobic004G327000--Sobic006G018701 Sobic004G327000--Sobic007G161100 Sobic004G327000--Sobic004G160000 Sobic004G327000--Sobic007G195000 Sobic003G160600 Sobic003G160600 Sobic004G327000--Sobic003G160600 Sobic004G327000--Sobic003G343300 Sobic004G327000--Sobic010G026200 Sobic009G158300 Sobic009G158300 Sobic004G327000--Sobic009G158300 Sobic001G188100 Sobic001G188100 Sobic004G327000--Sobic001G188100 Sobic004G348000--Sobic004G059200 Sobic001G251000 Sobic001G251000 Sobic004G348000--Sobic001G251000 Sobic009G125100 Sobic009G125100 Sobic004G348000--Sobic009G125100 Sobic004G060400 Sobic004G060400 Sobic004G348000--Sobic004G060400 Sobic004G348000--Sobic007G161100 Sobic009G176200 Sobic009G176200 Sobic004G348000--Sobic009G176200 Sobic005G200100 Sobic005G200100 Sobic004G348000--Sobic005G200100 Sobic004G348000--Sobic005G039000 Sobic004G348000--Sobic001G196400 Sobic006G232700--Sobic001G196400 Sobic006G232700--Sobic003G317000 Sobic010G030500 Sobic010G030500 Sobic006G232700--Sobic010G030500 Sobic006G232700--Sobic003G208900 Sobic006G232700--Sobic004G042800 Sobic006G232700--Sobic003G305500 Sobic001G435300 Sobic001G435300 Sobic006G232700--Sobic001G435300 Sobic010G074000 Sobic010G074000 Sobic006G232700--Sobic010G074000 Sobic002G298201 Sobic002G298201 Sobic006G232700--Sobic002G298201 Sobic003G317000--Sobic001G196400 Sobic003G317000--Sobic003G305500 Sobic009G062600 Sobic009G062600 Sobic003G317000--Sobic009G062600 Sobic003G317000--Sobic003G208900 Sobic001G002400 Sobic001G002400 Sobic003G317000--Sobic001G002400 Sobic003G317000--Sobic003G343000 Sobic006G164800 Sobic006G164800 Sobic003G317000--Sobic006G164800 Sobic003G317000--Sobic006G232700 Sobic003G317000--Sobic004G042800 Sobic005G039000--Sobic003G343300 Sobic005G039000--Sobic003G208900 Sobic005G039000--Sobic007G195000 Sobic005G039000--Sobic003G343000 Sobic005G039000--Sobic007G139300 Sobic005G039000--Sobic007G185801 Sobic005G039000--Sobic006G062100 Sobic005G039000--Sobic006G018701 Sobic005G039000--Sobic004G327000
Octagon: transcription factors


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