Gene annotation
Transcriptome id Sobic.006G045500.2
Synonym Sb06g011760
Functional annotation OsFBO3 - F-box and other domain containing protein, expressed
UniProt A0A1Z5RCB1
Pfam PF08238 PF01753
Panther DB PTHR12298 PTHR12298:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67340 : HCP-like superfamily protein with MYND-type zinc finger
RAP-DB (Rice) LOC_Os04g31610.1 : OsFBO3 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026248 , Zm00025a055875 , Zm00025a039286 , Zm00025a011795
Brachypodium KQK11262 , KQJ82256 , PNT68671
Barley HORVU2Hr1G069440.5 , HORVU2Hr1G069440.4 , HORVU2Hr1G069440.6 , HORVU2Hr1G069440.1 , HORVU2Hr1G069440.3 , HORVU2Hr1G069440.2 , HORVU2Hr1G056510.10 , HORVU1Hr1G007300.1 , HORVU1Hr1G007300.2 , HORVU4Hr1G080860.1 , HORVU2Hr1G081910.1 , HORVU2Hr1G081910.2 , HORVU3Hr1G094600.4 , HORVU3Hr1G094600.2 , HORVU3Hr1G094600.3 , HORVU3Hr1G094600.1
Wheat TraesCS3D02G425300 , TraesCS3B02G468000 , TraesCS3A02G429900 , TraesCS2D02G281100 , TraesCS2D02G281100 , TraesCS2A02G282300 , TraesCS2A02G282300 , TraesCS3B02G467900 , TraesCS2B02G299700
Populus -


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cDNA sequences
Sobic.006G045500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G477600 zinc finger protein, putative, expressed -
2 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
3 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
4 Sobic.009G234100 WRKY49, expressed -
5 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
6 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
8 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.007G015600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
10 Sobic.008G044300 U-box domain-containing protein, putative, expressed -
11 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
12 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
13 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
14 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G190900 expressed protein -
16 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
17 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
19 Sobic.008G136400 expressed protein -
20 Sobic.009G139400 expressed protein -


Gene co-expression network
sample Sobic006G045500 Sobic006G045500 Sobic001G477600 Sobic001G477600 Sobic006G045500--Sobic001G477600 Sobic002G353900 Sobic002G353900 Sobic006G045500--Sobic002G353900 Sobic009G221400 Sobic009G221400 Sobic006G045500--Sobic009G221400 Sobic009G234100 Sobic009G234100 Sobic006G045500--Sobic009G234100 Sobic001G038900 Sobic001G038900 Sobic006G045500--Sobic001G038900 Sobic002G055700 Sobic002G055700 Sobic006G045500--Sobic002G055700 Sobic001G055600 Sobic001G055600 Sobic006G045500--Sobic001G055600 Sobic001G112200 Sobic001G112200 Sobic006G045500--Sobic001G112200 Sobic007G015600 Sobic007G015600 Sobic006G045500--Sobic007G015600 Sobic001G138600 Sobic001G138600 Sobic001G477600--Sobic001G138600 Sobic001G477600--Sobic001G112200 Sobic003G369100 Sobic003G369100 Sobic001G477600--Sobic003G369100 Sobic002G336600 Sobic002G336600 Sobic001G477600--Sobic002G336600 Sobic003G382800 Sobic003G382800 Sobic001G477600--Sobic003G382800 Sobic007G074000 Sobic007G074000 Sobic001G477600--Sobic007G074000 Sobic003G345100 Sobic003G345100 Sobic001G477600--Sobic003G345100 Sobic005G099000 Sobic005G099000 Sobic001G477600--Sobic005G099000 Sobic004G141200 Sobic004G141200 Sobic001G477600--Sobic004G141200 Sobic002G353900--Sobic002G055700 Sobic003G382600 Sobic003G382600 Sobic002G353900--Sobic003G382600 Sobic001G367600 Sobic001G367600 Sobic002G353900--Sobic001G367600 Sobic002G302500 Sobic002G302500 Sobic002G353900--Sobic002G302500 Sobic002G192000 Sobic002G192000 Sobic002G353900--Sobic002G192000 Sobic002G353900--Sobic009G221400 Sobic009G139400 Sobic009G139400 Sobic002G353900--Sobic009G139400 Sobic006G158600 Sobic006G158600 Sobic002G353900--Sobic006G158600 Sobic002G353900--Sobic009G234100 Sobic009G221400--Sobic002G353900 Sobic003G041600 Sobic003G041600 Sobic009G221400--Sobic003G041600 Sobic009G221400--Sobic006G158600 Sobic008G044300 Sobic008G044300 Sobic009G221400--Sobic008G044300 Sobic009G221400--Sobic002G336600 Sobic009G221400--Sobic001G477600 Sobic004G208700 Sobic004G208700 Sobic009G221400--Sobic004G208700 Sobic009G070400 Sobic009G070400 Sobic009G221400--Sobic009G070400 Sobic009G221400--Sobic002G192000 Sobic009G234100--Sobic004G208700 Sobic005G063100 Sobic005G063100 Sobic009G234100--Sobic005G063100 Sobic009G234100--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic009G234100--Sobic003G286600 Sobic001G435000 Sobic001G435000 Sobic009G234100--Sobic001G435000 Sobic008G050600 Sobic008G050600 Sobic009G234100--Sobic008G050600 Sobic009G234100--Sobic005G099000 Sobic007G155000 Sobic007G155000 Sobic009G234100--Sobic007G155000 Sobic010G259600 Sobic010G259600 Sobic009G234100--Sobic010G259600 Sobic002G140400 Sobic002G140400 Sobic001G038900--Sobic002G140400 Sobic001G140900 Sobic001G140900 Sobic001G038900--Sobic001G140900 Sobic008G136400 Sobic008G136400 Sobic001G038900--Sobic008G136400 Sobic001G038900--Sobic008G050600 Sobic001G423800 Sobic001G423800 Sobic001G038900--Sobic001G423800 Sobic009G159400 Sobic009G159400 Sobic001G038900--Sobic009G159400 Sobic001G038900--Sobic003G345100 Sobic001G038900--Sobic001G367600 Sobic004G189400 Sobic004G189400 Sobic001G038900--Sobic004G189400 Sobic003G303100 Sobic003G303100 Sobic002G055700--Sobic003G303100 Sobic002G055700--Sobic003G382600 Sobic004G237800 Sobic004G237800 Sobic002G055700--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic002G055700--Sobic003G426400 Sobic002G055700--Sobic002G353900 Sobic004G148200 Sobic004G148200 Sobic002G055700--Sobic004G148200 Sobic002G055700--Sobic004G189400 Sobic002G338500 Sobic002G338500 Sobic002G055700--Sobic002G338500 Sobic002G055700--Sobic001G367600 Sobic001G390300 Sobic001G390300 Sobic001G055600--Sobic001G390300 Sobic001G055600--Sobic007G074000 Sobic002G407900 Sobic002G407900 Sobic001G055600--Sobic002G407900 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic004G065500 Sobic004G065500 Sobic001G055600--Sobic004G065500 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic009G247900 Sobic009G247900 Sobic001G055600--Sobic009G247900 Sobic009G184000 Sobic009G184000 Sobic001G112200--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic003G367200 Sobic003G367200 Sobic007G015600--Sobic003G367200 Sobic006G275200 Sobic006G275200 Sobic007G015600--Sobic006G275200 Sobic007G015600--Sobic003G382800 Sobic004G100700 Sobic004G100700 Sobic007G015600--Sobic004G100700 Sobic002G393000 Sobic002G393000 Sobic007G015600--Sobic002G393000 Sobic007G015600--Sobic001G038900 Sobic003G086600 Sobic003G086600 Sobic007G015600--Sobic003G086600 Sobic009G183400 Sobic009G183400 Sobic007G015600--Sobic009G183400 Sobic007G015600--Sobic003G345100
Octagon: transcription factors


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