Gene annotation
Transcriptome id Sobic.006G252400.2,Sobic.006G252400.1,Sobic.006G252400.3
Synonym Sb06g031720
Functional annotation S4 domain containing protein, putative, expressed
UniProt C5Y9M9 , A0A1Z5RFG5 , A0A1Z5RG61
Pfam PF01479 PF00163 PF01479
Panther DB PTHR11831 PTHR11831:SF1
NCBI CDD KOG4655; U3 small nucleolar ribonucleoprotein (snoRNP) component
KEGG Orthology K14560; U3 small nucleolar ribonucleoprotein protein IMP3
Gene Ontology GO:0003723; RNA binding GO:0005622intracellular GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G15750 : Alpha-L RNA-binding motif/Ribosomal protein S4 family protein
RAP-DB (Rice) LOC_Os04g56670.2 : S4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a042646
Brachypodium KQJ85126
Barley HORVU2Hr1G110610.2 , HORVU2Hr1G110610.1
Wheat TraesCS2B02G523800 , TraesCS2D02G495800 , TraesCS2A02G495500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G005100 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
2 Sobic.004G127300 - -
3 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
4 Sobic.002G113200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
6 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
7 Sobic.007G184800 transcription factor RF2a, putative, expressed -
8 Sobic.008G036600 expressed protein -
9 Sobic.010G260900 - -
10 Sobic.003G091600 expressed protein -
11 Sobic.003G130700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
12 Sobic.010G161000 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.26 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
13 Sobic.002G382300 expressed protein -
14 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
15 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
16 Sobic.010G202200 - -
17 Sobic.003G212000 OsCML12 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
18 Sobic.003G289100 3-5 exonuclease domain-containing protein, putative, expressed -
19 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
20 Sobic.007G039200 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic006G252400 Sobic006G252400 Sobic003G005100 Sobic003G005100 Sobic006G252400--Sobic003G005100 Sobic004G127300 Sobic004G127300 Sobic006G252400--Sobic004G127300 Sobic007G192400 Sobic007G192400 Sobic006G252400--Sobic007G192400 Sobic002G113200 Sobic002G113200 Sobic006G252400--Sobic002G113200 Sobic004G259300 Sobic004G259300 Sobic006G252400--Sobic004G259300 Sobic003G213000 Sobic003G213000 Sobic006G252400--Sobic003G213000 Sobic007G184800 Sobic007G184800 Sobic006G252400--Sobic007G184800 Sobic008G036600 Sobic008G036600 Sobic006G252400--Sobic008G036600 Sobic010G260900 Sobic010G260900 Sobic006G252400--Sobic010G260900 Sobic003G005100--Sobic002G113200 Sobic003G212000 Sobic003G212000 Sobic003G005100--Sobic003G212000 Sobic003G005100--Sobic006G252400 Sobic003G284100 Sobic003G284100 Sobic003G005100--Sobic003G284100 Sobic010G161000 Sobic010G161000 Sobic003G005100--Sobic010G161000 Sobic003G234500 Sobic003G234500 Sobic003G005100--Sobic003G234500 Sobic003G353700 Sobic003G353700 Sobic003G005100--Sobic003G353700 Sobic007G219500 Sobic007G219500 Sobic003G005100--Sobic007G219500 Sobic003G005100--Sobic004G259300 Sobic004G127300--Sobic006G252400 Sobic004G127300--Sobic007G192400 Sobic004G016100 Sobic004G016100 Sobic004G127300--Sobic004G016100 Sobic007G082200 Sobic007G082200 Sobic004G127300--Sobic007G082200 Sobic006G239700 Sobic006G239700 Sobic004G127300--Sobic006G239700 Sobic004G127300--Sobic010G260900 Sobic004G127300--Sobic004G259300 Sobic004G127300--Sobic003G353700 Sobic008G006000 Sobic008G006000 Sobic004G127300--Sobic008G006000 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G077532 Sobic007G077532 Sobic007G192400--Sobic007G077532 Sobic010G181600 Sobic010G181600 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic007G192400--Sobic008G036600 Sobic004G141400 Sobic004G141400 Sobic007G192400--Sobic004G141400 Sobic002G113200--Sobic003G212000 Sobic008G071300 Sobic008G071300 Sobic002G113200--Sobic008G071300 Sobic002G113200--Sobic003G234500 Sobic009G157800 Sobic009G157800 Sobic002G113200--Sobic009G157800 Sobic004G279200 Sobic004G279200 Sobic002G113200--Sobic004G279200 Sobic001G503600 Sobic001G503600 Sobic002G113200--Sobic001G503600 Sobic006G267100 Sobic006G267100 Sobic002G113200--Sobic006G267100 Sobic002G113200--Sobic003G284100 Sobic010G043250 Sobic010G043250 Sobic002G113200--Sobic010G043250 Sobic004G218300 Sobic004G218300 Sobic004G259300--Sobic004G218300 Sobic004G259300--Sobic004G141400 Sobic004G259300--Sobic007G192400 Sobic003G250400 Sobic003G250400 Sobic004G259300--Sobic003G250400 Sobic004G259300--Sobic007G184800 Sobic004G259300--Sobic003G005100 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic004G259300--Sobic008G006000 Sobic008G155500 Sobic008G155500 Sobic003G213000--Sobic008G155500 Sobic010G202200 Sobic010G202200 Sobic003G213000--Sobic010G202200 Sobic002G382300 Sobic002G382300 Sobic003G213000--Sobic002G382300 Sobic001G519600 Sobic001G519600 Sobic003G213000--Sobic001G519600 Sobic009G230800 Sobic009G230800 Sobic003G213000--Sobic009G230800 Sobic010G024400 Sobic010G024400 Sobic003G213000--Sobic010G024400 Sobic005G110424 Sobic005G110424 Sobic003G213000--Sobic005G110424 Sobic008G100600 Sobic008G100600 Sobic003G213000--Sobic008G100600 Sobic006G117700 Sobic006G117700 Sobic003G213000--Sobic006G117700 Sobic003G091600 Sobic003G091600 Sobic007G184800--Sobic003G091600 Sobic007G184800--Sobic003G213000 Sobic003G289100 Sobic003G289100 Sobic007G184800--Sobic003G289100 Sobic007G184800--Sobic004G259300 Sobic004G082800 Sobic004G082800 Sobic007G184800--Sobic004G082800 Sobic007G184800--Sobic001G519600 Sobic007G184800--Sobic010G202200 Sobic007G184800--Sobic009G230800 Sobic010G146000 Sobic010G146000 Sobic007G184800--Sobic010G146000 Sobic008G036600--Sobic010G202200 Sobic003G236000 Sobic003G236000 Sobic008G036600--Sobic003G236000 Sobic001G024400 Sobic001G024400 Sobic008G036600--Sobic001G024400 Sobic008G036600--Sobic010G024400 Sobic005G225500 Sobic005G225500 Sobic008G036600--Sobic005G225500 Sobic008G036600--Sobic005G110424 Sobic007G039200 Sobic007G039200 Sobic008G036600--Sobic007G039200 Sobic005G185500 Sobic005G185500 Sobic008G036600--Sobic005G185500 Sobic008G036600--Sobic009G230800 Sobic010G260900--Sobic003G353700 Sobic010G260900--Sobic008G100600 Sobic001G504500 Sobic001G504500 Sobic010G260900--Sobic001G504500 Sobic010G260900--Sobic010G202200 Sobic010G260900--Sobic010G146000 Sobic010G260900--Sobic003G213000 Sobic010G260900--Sobic008G036600 Sobic010G260900--Sobic001G024400 Sobic010G260900--Sobic007G192400
Octagon: transcription factors


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