Gene annotation
Transcriptome id Sobic.007G184800.1
Synonym Sb07g025490
Functional annotation transcription factor RF2a, putative, expressed
UniProt C5YH98
Pfam PF07716
Panther DB PTHR13690 PTHR13690:SF80
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G06070 : Basic-leucine zipper (bZIP) transcription factor family protein
RAP-DB (Rice) LOC_Os09g34060.1 : transcription factor RF2a, putative, expressed
MaizeGDB (Corn) Zm00025a033620 , Zm00025a005337
Brachypodium KQJ99212
Barley HORVU5Hr1G079160.12 , HORVU5Hr1G079160.13 , HORVU5Hr1G079160.10 , HORVU5Hr1G079160.11 , HORVU5Hr1G079160.1 , HORVU5Hr1G079160.2 , HORVU5Hr1G079160.3 , HORVU5Hr1G079160.4 , HORVU5Hr1G079160.5 , HORVU5Hr1G079160.6 , HORVU5Hr1G079160.7 , HORVU5Hr1G079160.8 , HORVU5Hr1G079160.9
Wheat TraesCS7B02G166100 , TraesCS5B02G301900 , TraesCS5D02G308600 , TraesCS7D02G268400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G091600 expressed protein -
2 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
3 Sobic.003G289100 3-5 exonuclease domain-containing protein, putative, expressed -
4 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
5 Sobic.004G082800 GRAM and C2 domains containing protein, putative, expressed -
6 Sobic.001G519600 - -
7 Sobic.010G202200 - -
8 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
9 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
10 Sobic.010G130601 - -
11 Sobic.008G155500 ankyrin repeat domain-containing protein 44, putative, expressed -
12 Sobic.008G036600 expressed protein -
13 Sobic.007G039200 MYB family transcription factor, putative, expressed -
14 Sobic.006G117700 - -
15 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
16 Sobic.002G382300 expressed protein -
17 Sobic.010G024400 expressed protein -
18 Sobic.008G100600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
19 Sobic.008G007600 - -
20 Sobic.008G128500 - -


Gene co-expression network
sample Sobic007G184800 Sobic007G184800 Sobic003G091600 Sobic003G091600 Sobic007G184800--Sobic003G091600 Sobic003G213000 Sobic003G213000 Sobic007G184800--Sobic003G213000 Sobic003G289100 Sobic003G289100 Sobic007G184800--Sobic003G289100 Sobic004G259300 Sobic004G259300 Sobic007G184800--Sobic004G259300 Sobic004G082800 Sobic004G082800 Sobic007G184800--Sobic004G082800 Sobic001G519600 Sobic001G519600 Sobic007G184800--Sobic001G519600 Sobic010G202200 Sobic010G202200 Sobic007G184800--Sobic010G202200 Sobic009G230800 Sobic009G230800 Sobic007G184800--Sobic009G230800 Sobic010G146000 Sobic010G146000 Sobic007G184800--Sobic010G146000 Sobic003G091600--Sobic007G184800 Sobic003G091600--Sobic003G289100 Sobic003G091600--Sobic003G213000 Sobic008G155400 Sobic008G155400 Sobic003G091600--Sobic008G155400 Sobic002G203600 Sobic002G203600 Sobic003G091600--Sobic002G203600 Sobic003G091600--Sobic010G146000 Sobic008G036600 Sobic008G036600 Sobic003G091600--Sobic008G036600 Sobic007G192400 Sobic007G192400 Sobic003G091600--Sobic007G192400 Sobic003G091600--Sobic001G519600 Sobic008G155500 Sobic008G155500 Sobic003G213000--Sobic008G155500 Sobic003G213000--Sobic010G202200 Sobic002G382300 Sobic002G382300 Sobic003G213000--Sobic002G382300 Sobic003G213000--Sobic001G519600 Sobic003G213000--Sobic009G230800 Sobic010G024400 Sobic010G024400 Sobic003G213000--Sobic010G024400 Sobic005G110424 Sobic005G110424 Sobic003G213000--Sobic005G110424 Sobic008G100600 Sobic008G100600 Sobic003G213000--Sobic008G100600 Sobic006G117700 Sobic006G117700 Sobic003G213000--Sobic006G117700 Sobic003G289100--Sobic003G091600 Sobic003G289100--Sobic007G184800 Sobic003G289100--Sobic003G213000 Sobic010G073600 Sobic010G073600 Sobic003G289100--Sobic010G073600 Sobic004G218300 Sobic004G218300 Sobic003G289100--Sobic004G218300 Sobic003G289100--Sobic004G259300 Sobic003G289100--Sobic001G519600 Sobic003G289100--Sobic007G192400 Sobic003G289100--Sobic008G155500 Sobic004G259300--Sobic004G218300 Sobic004G141400 Sobic004G141400 Sobic004G259300--Sobic004G141400 Sobic004G259300--Sobic007G192400 Sobic003G250400 Sobic003G250400 Sobic004G259300--Sobic003G250400 Sobic004G259300--Sobic007G184800 Sobic003G005100 Sobic003G005100 Sobic004G259300--Sobic003G005100 Sobic007G077532 Sobic007G077532 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic008G006000 Sobic008G006000 Sobic004G259300--Sobic008G006000 Sobic004G082800--Sobic006G117700 Sobic004G082800--Sobic010G024400 Sobic004G082800--Sobic010G202200 Sobic010G130601 Sobic010G130601 Sobic004G082800--Sobic010G130601 Sobic004G082800--Sobic005G110424 Sobic004G082800--Sobic009G230800 Sobic001G024400 Sobic001G024400 Sobic004G082800--Sobic001G024400 Sobic004G064200 Sobic004G064200 Sobic004G082800--Sobic004G064200 Sobic004G082800--Sobic001G519600 Sobic001G519600--Sobic009G230800 Sobic001G519600--Sobic010G202200 Sobic001G519600--Sobic008G155500 Sobic001G340800 Sobic001G340800 Sobic001G519600--Sobic001G340800 Sobic009G061500 Sobic009G061500 Sobic001G519600--Sobic009G061500 Sobic006G269101 Sobic006G269101 Sobic001G519600--Sobic006G269101 Sobic006G143700 Sobic006G143700 Sobic001G519600--Sobic006G143700 Sobic008G148600 Sobic008G148600 Sobic001G519600--Sobic008G148600 Sobic001G519600--Sobic010G024400 Sobic010G202200--Sobic009G230800 Sobic010G202200--Sobic006G269101 Sobic010G202200--Sobic008G148600 Sobic008G136601 Sobic008G136601 Sobic010G202200--Sobic008G136601 Sobic010G202200--Sobic001G340800 Sobic006G027601 Sobic006G027601 Sobic010G202200--Sobic006G027601 Sobic010G202200--Sobic005G110424 Sobic003G156900 Sobic003G156900 Sobic010G202200--Sobic003G156900 Sobic008G097966 Sobic008G097966 Sobic010G202200--Sobic008G097966 Sobic009G230800--Sobic010G202200 Sobic009G230800--Sobic006G269101 Sobic004G052600 Sobic004G052600 Sobic009G230800--Sobic004G052600 Sobic009G230800--Sobic008G136601 Sobic009G230800--Sobic001G340800 Sobic004G328500 Sobic004G328500 Sobic009G230800--Sobic004G328500 Sobic009G230800--Sobic008G148600 Sobic005G000900 Sobic005G000900 Sobic009G230800--Sobic005G000900 Sobic005G221675 Sobic005G221675 Sobic009G230800--Sobic005G221675 Sobic004G011900 Sobic004G011900 Sobic010G146000--Sobic004G011900 Sobic010G146000--Sobic008G100600 Sobic008G100300 Sobic008G100300 Sobic010G146000--Sobic008G100300 Sobic010G146000--Sobic003G213000 Sobic001G405100 Sobic001G405100 Sobic010G146000--Sobic001G405100 Sobic010G146000--Sobic005G110424 Sobic010G146000--Sobic004G082800 Sobic010G146000--Sobic010G202200 Sobic010G146000--Sobic008G036600
Octagon: transcription factors


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