Gene annotation
Transcriptome id Sobic.003G289100.1
Synonym WRNEXO, ATWRNEXO, WEX, Sb03g033970, ATWEX
Functional annotation 3-5 exonuclease domain-containing protein, putative, expressed
UniProt C5XJ63
Pfam PF01612
Panther DB PTHR13620 PTHR13620:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G36110 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os01g53580.1 : 3-5 exonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027679
Brachypodium -
Barley -
Wheat TraesCS7D02G297900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G091600 expressed protein -
2 Sobic.007G184800 transcription factor RF2a, putative, expressed -
3 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
4 Sobic.010G073600 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@auxin response factor, putative, expressed -
5 Sobic.004G218300 Zinc finger, ZZ type domain containing protein, expressed -
6 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
7 Sobic.001G519600 - -
8 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
9 Sobic.008G155500 ankyrin repeat domain-containing protein 44, putative, expressed -
10 Sobic.006G252400 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
11 Sobic.003G402900 HYS1, putative, expressed -
12 Sobic.009G228400 lipase-related, putative, expressed -
13 Sobic.005G030700 MATH domain containing protein, expressed -
14 Sobic.001G245400 - -
15 Sobic.003G196400 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
16 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
17 Sobic.010G024400 expressed protein -
18 Sobic.008G036600 expressed protein -
19 Sobic.002G203600 protein binding protein, putative, expressed K11975: E3 ubiquitin-protein ligase RNF144
20 Sobic.002G147100 esterase/lipase/thioesterase, putative, expressed -


Gene co-expression network
sample Sobic003G289100 Sobic003G289100 Sobic003G091600 Sobic003G091600 Sobic003G289100--Sobic003G091600 Sobic007G184800 Sobic007G184800 Sobic003G289100--Sobic007G184800 Sobic003G213000 Sobic003G213000 Sobic003G289100--Sobic003G213000 Sobic010G073600 Sobic010G073600 Sobic003G289100--Sobic010G073600 Sobic004G218300 Sobic004G218300 Sobic003G289100--Sobic004G218300 Sobic004G259300 Sobic004G259300 Sobic003G289100--Sobic004G259300 Sobic001G519600 Sobic001G519600 Sobic003G289100--Sobic001G519600 Sobic007G192400 Sobic007G192400 Sobic003G289100--Sobic007G192400 Sobic008G155500 Sobic008G155500 Sobic003G289100--Sobic008G155500 Sobic003G091600--Sobic007G184800 Sobic003G091600--Sobic003G289100 Sobic003G091600--Sobic003G213000 Sobic008G155400 Sobic008G155400 Sobic003G091600--Sobic008G155400 Sobic002G203600 Sobic002G203600 Sobic003G091600--Sobic002G203600 Sobic010G146000 Sobic010G146000 Sobic003G091600--Sobic010G146000 Sobic008G036600 Sobic008G036600 Sobic003G091600--Sobic008G036600 Sobic003G091600--Sobic007G192400 Sobic003G091600--Sobic001G519600 Sobic007G184800--Sobic003G091600 Sobic007G184800--Sobic003G213000 Sobic007G184800--Sobic003G289100 Sobic007G184800--Sobic004G259300 Sobic004G082800 Sobic004G082800 Sobic007G184800--Sobic004G082800 Sobic007G184800--Sobic001G519600 Sobic010G202200 Sobic010G202200 Sobic007G184800--Sobic010G202200 Sobic009G230800 Sobic009G230800 Sobic007G184800--Sobic009G230800 Sobic007G184800--Sobic010G146000 Sobic003G213000--Sobic008G155500 Sobic003G213000--Sobic010G202200 Sobic002G382300 Sobic002G382300 Sobic003G213000--Sobic002G382300 Sobic003G213000--Sobic001G519600 Sobic003G213000--Sobic009G230800 Sobic010G024400 Sobic010G024400 Sobic003G213000--Sobic010G024400 Sobic005G110424 Sobic005G110424 Sobic003G213000--Sobic005G110424 Sobic008G100600 Sobic008G100600 Sobic003G213000--Sobic008G100600 Sobic006G117700 Sobic006G117700 Sobic003G213000--Sobic006G117700 Sobic006G215100 Sobic006G215100 Sobic010G073600--Sobic006G215100 Sobic010G237650 Sobic010G237650 Sobic010G073600--Sobic010G237650 Sobic003G229400 Sobic003G229400 Sobic010G073600--Sobic003G229400 Sobic006G130200 Sobic006G130200 Sobic010G073600--Sobic006G130200 Sobic010G073600--Sobic004G218300 Sobic005G128000 Sobic005G128000 Sobic010G073600--Sobic005G128000 Sobic010G073600--Sobic003G289100 Sobic006G144000 Sobic006G144000 Sobic010G073600--Sobic006G144000 Sobic003G402900 Sobic003G402900 Sobic010G073600--Sobic003G402900 Sobic003G398400 Sobic003G398400 Sobic004G218300--Sobic003G398400 Sobic004G218300--Sobic006G130200 Sobic004G218300--Sobic004G259300 Sobic009G228400 Sobic009G228400 Sobic004G218300--Sobic009G228400 Sobic004G218300--Sobic006G215100 Sobic003G407100 Sobic003G407100 Sobic004G218300--Sobic003G407100 Sobic004G218300--Sobic007G192400 Sobic002G147100 Sobic002G147100 Sobic004G218300--Sobic002G147100 Sobic002G317400 Sobic002G317400 Sobic004G218300--Sobic002G317400 Sobic004G259300--Sobic004G218300 Sobic004G141400 Sobic004G141400 Sobic004G259300--Sobic004G141400 Sobic004G259300--Sobic007G192400 Sobic003G250400 Sobic003G250400 Sobic004G259300--Sobic003G250400 Sobic004G259300--Sobic007G184800 Sobic003G005100 Sobic003G005100 Sobic004G259300--Sobic003G005100 Sobic007G077532 Sobic007G077532 Sobic004G259300--Sobic007G077532 Sobic007G177500 Sobic007G177500 Sobic004G259300--Sobic007G177500 Sobic008G006000 Sobic008G006000 Sobic004G259300--Sobic008G006000 Sobic001G519600--Sobic009G230800 Sobic001G519600--Sobic010G202200 Sobic001G519600--Sobic008G155500 Sobic001G340800 Sobic001G340800 Sobic001G519600--Sobic001G340800 Sobic009G061500 Sobic009G061500 Sobic001G519600--Sobic009G061500 Sobic006G269101 Sobic006G269101 Sobic001G519600--Sobic006G269101 Sobic006G143700 Sobic006G143700 Sobic001G519600--Sobic006G143700 Sobic008G148600 Sobic008G148600 Sobic001G519600--Sobic008G148600 Sobic001G519600--Sobic010G024400 Sobic003G353700 Sobic003G353700 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G192400--Sobic007G077532 Sobic010G181600 Sobic010G181600 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic007G192400--Sobic004G259300 Sobic007G192400--Sobic002G203600 Sobic007G192400--Sobic008G036600 Sobic007G192400--Sobic004G141400 Sobic008G088500 Sobic008G088500 Sobic008G155500--Sobic008G088500 Sobic002G096600 Sobic002G096600 Sobic008G155500--Sobic002G096600 Sobic005G058000 Sobic005G058000 Sobic008G155500--Sobic005G058000 Sobic008G168500 Sobic008G168500 Sobic008G155500--Sobic008G168500 Sobic005G058200 Sobic005G058200 Sobic008G155500--Sobic005G058200 Sobic001G364300 Sobic001G364300 Sobic008G155500--Sobic001G364300 Sobic005G007200 Sobic005G007200 Sobic008G155500--Sobic005G007200 Sobic001G021200 Sobic001G021200 Sobic008G155500--Sobic001G021200 Sobic009G047900 Sobic009G047900 Sobic008G155500--Sobic009G047900
Octagon: transcription factors


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