Gene annotation
Transcriptome id Sobic.001G245400.1
Synonym
Functional annotation -
UniProt A0A1B6QKT5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G024400 expressed protein -
2 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
3 Sobic.004G082800 GRAM and C2 domains containing protein, putative, expressed -
4 Sobic.008G036600 expressed protein -
5 Sobic.005G169500 GAUT2/LGT2, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
6 Sobic.010G202200 - -
7 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
8 Sobic.003G236000 CGMC_MAPKCMGC_2.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.006G117700 - -
10 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
11 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
12 Sobic.005G225500 expressed protein -
13 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
14 Sobic.001G519600 - -
15 Sobic.010G134650 - -
16 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
17 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.007G039200 MYB family transcription factor, putative, expressed -
19 Sobic.004G140400 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
20 Sobic.010G255900 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17


Gene co-expression network
sample Sobic001G245400 Sobic001G245400 Sobic010G024400 Sobic010G024400 Sobic001G245400--Sobic010G024400 Sobic003G353700 Sobic003G353700 Sobic001G245400--Sobic003G353700 Sobic004G082800 Sobic004G082800 Sobic001G245400--Sobic004G082800 Sobic008G036600 Sobic008G036600 Sobic001G245400--Sobic008G036600 Sobic005G169500 Sobic005G169500 Sobic001G245400--Sobic005G169500 Sobic010G202200 Sobic010G202200 Sobic001G245400--Sobic010G202200 Sobic001G024400 Sobic001G024400 Sobic001G245400--Sobic001G024400 Sobic003G236000 Sobic003G236000 Sobic001G245400--Sobic003G236000 Sobic006G117700 Sobic006G117700 Sobic001G245400--Sobic006G117700 Sobic010G024400--Sobic010G202200 Sobic009G230800 Sobic009G230800 Sobic010G024400--Sobic009G230800 Sobic010G024400--Sobic003G236000 Sobic004G064200 Sobic004G064200 Sobic010G024400--Sobic004G064200 Sobic001G519600 Sobic001G519600 Sobic010G024400--Sobic001G519600 Sobic006G269101 Sobic006G269101 Sobic010G024400--Sobic006G269101 Sobic008G148600 Sobic008G148600 Sobic010G024400--Sobic008G148600 Sobic005G225500 Sobic005G225500 Sobic010G024400--Sobic005G225500 Sobic010G024400--Sobic001G024400 Sobic007G192400 Sobic007G192400 Sobic003G353700--Sobic007G192400 Sobic003G353700--Sobic008G036600 Sobic005G063200 Sobic005G063200 Sobic003G353700--Sobic005G063200 Sobic003G353700--Sobic001G024400 Sobic007G039200 Sobic007G039200 Sobic003G353700--Sobic007G039200 Sobic010G181600 Sobic010G181600 Sobic003G353700--Sobic010G181600 Sobic003G353700--Sobic003G236000 Sobic004G074600 Sobic004G074600 Sobic003G353700--Sobic004G074600 Sobic008G006000 Sobic008G006000 Sobic003G353700--Sobic008G006000 Sobic004G082800--Sobic006G117700 Sobic004G082800--Sobic010G024400 Sobic004G082800--Sobic010G202200 Sobic010G130601 Sobic010G130601 Sobic004G082800--Sobic010G130601 Sobic005G110424 Sobic005G110424 Sobic004G082800--Sobic005G110424 Sobic004G082800--Sobic009G230800 Sobic004G082800--Sobic001G024400 Sobic004G082800--Sobic004G064200 Sobic004G082800--Sobic001G519600 Sobic008G036600--Sobic010G202200 Sobic008G036600--Sobic003G236000 Sobic008G036600--Sobic001G024400 Sobic008G036600--Sobic010G024400 Sobic008G036600--Sobic005G225500 Sobic008G036600--Sobic005G110424 Sobic008G036600--Sobic007G039200 Sobic005G185500 Sobic005G185500 Sobic008G036600--Sobic005G185500 Sobic008G036600--Sobic009G230800 Sobic003G117800 Sobic003G117800 Sobic005G169500--Sobic003G117800 Sobic005G169500--Sobic001G245400 Sobic005G169500--Sobic003G353700 Sobic005G169500--Sobic010G181600 Sobic001G424800 Sobic001G424800 Sobic005G169500--Sobic001G424800 Sobic005G169500--Sobic007G192400 Sobic003G385300 Sobic003G385300 Sobic005G169500--Sobic003G385300 Sobic001G057400 Sobic001G057400 Sobic005G169500--Sobic001G057400 Sobic008G055500 Sobic008G055500 Sobic005G169500--Sobic008G055500 Sobic010G202200--Sobic009G230800 Sobic010G202200--Sobic006G269101 Sobic010G202200--Sobic008G148600 Sobic008G136601 Sobic008G136601 Sobic010G202200--Sobic008G136601 Sobic001G340800 Sobic001G340800 Sobic010G202200--Sobic001G340800 Sobic006G027601 Sobic006G027601 Sobic010G202200--Sobic006G027601 Sobic010G202200--Sobic005G110424 Sobic003G156900 Sobic003G156900 Sobic010G202200--Sobic003G156900 Sobic008G097966 Sobic008G097966 Sobic010G202200--Sobic008G097966 Sobic006G143700 Sobic006G143700 Sobic001G024400--Sobic006G143700 Sobic001G024400--Sobic008G148600 Sobic001G024400--Sobic006G269101 Sobic001G024400--Sobic010G202200 Sobic001G024400--Sobic009G230800 Sobic001G024400--Sobic008G136601 Sobic001G024400--Sobic005G110424 Sobic001G024400--Sobic006G027601 Sobic003G175000 Sobic003G175000 Sobic001G024400--Sobic003G175000 Sobic006G001100 Sobic006G001100 Sobic003G236000--Sobic006G001100 Sobic007G226700 Sobic007G226700 Sobic003G236000--Sobic007G226700 Sobic003G236000--Sobic005G225500 Sobic008G159701 Sobic008G159701 Sobic003G236000--Sobic008G159701 Sobic001G220500 Sobic001G220500 Sobic003G236000--Sobic001G220500 Sobic003G236000--Sobic006G027601 Sobic003G236000--Sobic010G202200 Sobic005G148950 Sobic005G148950 Sobic003G236000--Sobic005G148950 Sobic006G032000 Sobic006G032000 Sobic003G236000--Sobic006G032000 Sobic006G117700--Sobic004G082800 Sobic006G117700--Sobic010G202200 Sobic001G405100 Sobic001G405100 Sobic006G117700--Sobic001G405100 Sobic006G117700--Sobic003G156900 Sobic006G117700--Sobic006G027601 Sobic006G117700--Sobic005G110424 Sobic006G117700--Sobic006G001100 Sobic006G117700--Sobic001G340800 Sobic009G061500 Sobic009G061500 Sobic006G117700--Sobic009G061500
Octagon: transcription factors


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