Gene annotation
Transcriptome id Sobic.010G260900.1
Synonym
Functional annotation -
UniProt A0A194YLL3
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G353700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
2 Sobic.008G100600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
3 Sobic.001G504500 expressed protein -
4 Sobic.010G202200 - -
5 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
6 Sobic.003G213000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
7 Sobic.008G036600 expressed protein -
8 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
9 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
10 Sobic.005G128550 - -
11 Sobic.003G005100 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
12 Sobic.010G024400 expressed protein -
13 Sobic.005G110424 - -
14 Sobic.008G017850 - -
15 Sobic.006G252400 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
16 Sobic.008G148600 B3 DNA binding domain containing protein, expressed -
17 Sobic.001G245400 - -
18 Sobic.006G143700 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
19 Sobic.001G133400 - -
20 Sobic.003G236000 CGMC_MAPKCMGC_2.5 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3


Gene co-expression network
sample Sobic010G260900 Sobic010G260900 Sobic003G353700 Sobic003G353700 Sobic010G260900--Sobic003G353700 Sobic008G100600 Sobic008G100600 Sobic010G260900--Sobic008G100600 Sobic001G504500 Sobic001G504500 Sobic010G260900--Sobic001G504500 Sobic010G202200 Sobic010G202200 Sobic010G260900--Sobic010G202200 Sobic010G146000 Sobic010G146000 Sobic010G260900--Sobic010G146000 Sobic003G213000 Sobic003G213000 Sobic010G260900--Sobic003G213000 Sobic008G036600 Sobic008G036600 Sobic010G260900--Sobic008G036600 Sobic001G024400 Sobic001G024400 Sobic010G260900--Sobic001G024400 Sobic007G192400 Sobic007G192400 Sobic010G260900--Sobic007G192400 Sobic003G353700--Sobic007G192400 Sobic003G353700--Sobic008G036600 Sobic005G063200 Sobic005G063200 Sobic003G353700--Sobic005G063200 Sobic003G353700--Sobic001G024400 Sobic007G039200 Sobic007G039200 Sobic003G353700--Sobic007G039200 Sobic010G181600 Sobic010G181600 Sobic003G353700--Sobic010G181600 Sobic003G236000 Sobic003G236000 Sobic003G353700--Sobic003G236000 Sobic004G074600 Sobic004G074600 Sobic003G353700--Sobic004G074600 Sobic008G006000 Sobic008G006000 Sobic003G353700--Sobic008G006000 Sobic005G110424 Sobic005G110424 Sobic008G100600--Sobic005G110424 Sobic008G100600--Sobic010G202200 Sobic008G100600--Sobic010G146000 Sobic008G100600--Sobic001G024400 Sobic001G405100 Sobic001G405100 Sobic008G100600--Sobic001G405100 Sobic003G156900 Sobic003G156900 Sobic008G100600--Sobic003G156900 Sobic010G024400 Sobic010G024400 Sobic008G100600--Sobic010G024400 Sobic004G025900 Sobic004G025900 Sobic008G100600--Sobic004G025900 Sobic008G017850 Sobic008G017850 Sobic008G100600--Sobic008G017850 Sobic001G453600 Sobic001G453600 Sobic001G504500--Sobic001G453600 Sobic002G389600 Sobic002G389600 Sobic001G504500--Sobic002G389600 Sobic001G504500--Sobic001G024400 Sobic004G349450 Sobic004G349450 Sobic001G504500--Sobic004G349450 Sobic001G504500--Sobic010G202200 Sobic003G024100 Sobic003G024100 Sobic001G504500--Sobic003G024100 Sobic001G133400 Sobic001G133400 Sobic001G504500--Sobic001G133400 Sobic002G414800 Sobic002G414800 Sobic001G504500--Sobic002G414800 Sobic001G504500--Sobic007G039200 Sobic009G230800 Sobic009G230800 Sobic010G202200--Sobic009G230800 Sobic006G269101 Sobic006G269101 Sobic010G202200--Sobic006G269101 Sobic008G148600 Sobic008G148600 Sobic010G202200--Sobic008G148600 Sobic008G136601 Sobic008G136601 Sobic010G202200--Sobic008G136601 Sobic001G340800 Sobic001G340800 Sobic010G202200--Sobic001G340800 Sobic006G027601 Sobic006G027601 Sobic010G202200--Sobic006G027601 Sobic010G202200--Sobic005G110424 Sobic010G202200--Sobic003G156900 Sobic008G097966 Sobic008G097966 Sobic010G202200--Sobic008G097966 Sobic004G011900 Sobic004G011900 Sobic010G146000--Sobic004G011900 Sobic010G146000--Sobic008G100600 Sobic008G100300 Sobic008G100300 Sobic010G146000--Sobic008G100300 Sobic010G146000--Sobic003G213000 Sobic010G146000--Sobic001G405100 Sobic010G146000--Sobic005G110424 Sobic004G082800 Sobic004G082800 Sobic010G146000--Sobic004G082800 Sobic010G146000--Sobic010G202200 Sobic010G146000--Sobic008G036600 Sobic008G155500 Sobic008G155500 Sobic003G213000--Sobic008G155500 Sobic003G213000--Sobic010G202200 Sobic002G382300 Sobic002G382300 Sobic003G213000--Sobic002G382300 Sobic001G519600 Sobic001G519600 Sobic003G213000--Sobic001G519600 Sobic003G213000--Sobic009G230800 Sobic003G213000--Sobic010G024400 Sobic003G213000--Sobic005G110424 Sobic003G213000--Sobic008G100600 Sobic006G117700 Sobic006G117700 Sobic003G213000--Sobic006G117700 Sobic008G036600--Sobic010G202200 Sobic008G036600--Sobic003G236000 Sobic008G036600--Sobic001G024400 Sobic008G036600--Sobic010G024400 Sobic005G225500 Sobic005G225500 Sobic008G036600--Sobic005G225500 Sobic008G036600--Sobic005G110424 Sobic008G036600--Sobic007G039200 Sobic005G185500 Sobic005G185500 Sobic008G036600--Sobic005G185500 Sobic008G036600--Sobic009G230800 Sobic006G143700 Sobic006G143700 Sobic001G024400--Sobic006G143700 Sobic001G024400--Sobic008G148600 Sobic001G024400--Sobic006G269101 Sobic001G024400--Sobic010G202200 Sobic001G024400--Sobic009G230800 Sobic001G024400--Sobic008G136601 Sobic001G024400--Sobic005G110424 Sobic001G024400--Sobic006G027601 Sobic003G175000 Sobic003G175000 Sobic001G024400--Sobic003G175000 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G077532 Sobic007G077532 Sobic007G192400--Sobic007G077532 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic004G259300 Sobic004G259300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic007G192400--Sobic008G036600 Sobic004G141400 Sobic004G141400 Sobic007G192400--Sobic004G141400
Octagon: transcription factors


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