Gene annotation
Transcriptome id Sobic.009G239500.1
Synonym Sb09g029130
Functional annotation CTP synthase, putative, expressed
UniProt C5YW08
Pfam PF07722 PF06418
Panther DB PTHR11550 PTHR11550:SF10
NCBI CDD -
KEGG Orthology K01937; pyrG, CTP synthase
Gene Ontology GO:0016787; hydrolase activity GO:0006541glutamine metabolic process GO:0006221pyrimidine nucleotide biosynthetic process GO:0003883CTP synthase activity


Orthologs (automatic annotation)
TAIR AT1G30820 : CTP synthase family protein
RAP-DB (Rice) LOC_Os05g49770.1 : CTP synthase, putative, expressed
MaizeGDB (Corn) Zm00025a044646 , Zm00025a036664 , Zm00025a038694 , Zm00025a028208
Brachypodium PNT70676 , KQK09000 , KQK09001 , KQK09002 , KQK04764 , KQK04765
Barley HORVU3Hr1G058990.8 , HORVU3Hr1G058990.9 , HORVU3Hr1G058990.6 , HORVU3Hr1G058990.7 , HORVU3Hr1G058990.4 , HORVU3Hr1G058990.5 , HORVU3Hr1G058990.2 , HORVU3Hr1G058990.3 , HORVU3Hr1G058990.1 , HORVU3Hr1G058990.14 , HORVU3Hr1G058990.15 , HORVU3Hr1G058990.16 , HORVU3Hr1G058990.17 , HORVU3Hr1G058990.11 , HORVU3Hr1G058990.12 , HORVU3Hr1G058990.13 , HORVU3Hr1G058990.18 , HORVU3Hr1G058990.19 , HORVU1Hr1G090430.5 , HORVU1Hr1G090430.4 , HORVU1Hr1G090430.3 , HORVU1Hr1G090430.2 , HORVU1Hr1G090430.1 , HORVU3Hr1G058990.29 , HORVU3Hr1G058990.28 , HORVU3Hr1G058990.21 , HORVU3Hr1G058990.20 , HORVU3Hr1G058990.23 , HORVU3Hr1G058990.22 , HORVU3Hr1G058990.25 , HORVU3Hr1G058990.27 , HORVU3Hr1G058990.26 , HORVU3Hr1G058990.32 , HORVU3Hr1G058990.30 , HORVU3Hr1G058990.31
Wheat TraesCS3A02G236700 , TraesCS3A02G236700 , TraesCS3A02G236700 , TraesCS1B02G441900 , TraesCS3D02G237100 , TraesCS3B02G263100 , TraesCS3B02G263100 , TraesCS1D02G419400 , TraesCS1D02G419400 , TraesCS1D02G419400 , TraesCS1A02G411600 , TraesCS1A02G411600 , TraesCS1A02G411600 , TraesCS1A02G411600
Populus PNT45841


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
2 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
3 Sobic.001G330700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
4 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
5 Sobic.006G091100 expressed protein -
6 Sobic.001G026900 cytidine deaminase, putative, expressed -
7 Sobic.002G083266 - K00326: cytochrome-b5 reductase
8 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
9 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
10 Sobic.003G348400 ankyrin repeat-containing protein, putative, expressed -
11 Sobic.002G296300 expressed protein -
12 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
13 Sobic.001G158500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LSD1 zinc finger domain containing protein, expressed -
14 Sobic.007G195100 peptidase, T1 family, putative, expressed K02732: 20S proteasome subunit beta 6
15 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
16 Sobic.001G227500 expressed protein -
17 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
18 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
19 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
20 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -


Gene co-expression network
sample Sobic009G239500 Sobic009G239500 Sobic004G054300 Sobic004G054300 Sobic009G239500--Sobic004G054300 Sobic003G061900 Sobic003G061900 Sobic009G239500--Sobic003G061900 Sobic001G330700 Sobic001G330700 Sobic009G239500--Sobic001G330700 Sobic010G016400 Sobic010G016400 Sobic009G239500--Sobic010G016400 Sobic006G091100 Sobic006G091100 Sobic009G239500--Sobic006G091100 Sobic001G026900 Sobic001G026900 Sobic009G239500--Sobic001G026900 Sobic002G083266 Sobic002G083266 Sobic009G239500--Sobic002G083266 Sobic004G050000 Sobic004G050000 Sobic009G239500--Sobic004G050000 Sobic006G217700 Sobic006G217700 Sobic009G239500--Sobic006G217700 Sobic004G054300--Sobic006G217700 Sobic006G264300 Sobic006G264300 Sobic004G054300--Sobic006G264300 Sobic003G023500 Sobic003G023500 Sobic004G054300--Sobic003G023500 Sobic001G089500 Sobic001G089500 Sobic004G054300--Sobic001G089500 Sobic004G185900 Sobic004G185900 Sobic004G054300--Sobic004G185900 Sobic002G296300 Sobic002G296300 Sobic004G054300--Sobic002G296300 Sobic004G054300--Sobic002G083266 Sobic002G113800 Sobic002G113800 Sobic004G054300--Sobic002G113800 Sobic002G309400 Sobic002G309400 Sobic004G054300--Sobic002G309400 Sobic001G147200 Sobic001G147200 Sobic003G061900--Sobic001G147200 Sobic010G246000 Sobic010G246000 Sobic003G061900--Sobic010G246000 Sobic006G263100 Sobic006G263100 Sobic003G061900--Sobic006G263100 Sobic001G085900 Sobic001G085900 Sobic003G061900--Sobic001G085900 Sobic003G061900--Sobic001G330700 Sobic010G204300 Sobic010G204300 Sobic003G061900--Sobic010G204300 Sobic001G158500 Sobic001G158500 Sobic003G061900--Sobic001G158500 Sobic007G059900 Sobic007G059900 Sobic003G061900--Sobic007G059900 Sobic002G395600 Sobic002G395600 Sobic003G061900--Sobic002G395600 Sobic009G152200 Sobic009G152200 Sobic001G330700--Sobic009G152200 Sobic001G330700--Sobic001G147200 Sobic003G019200 Sobic003G019200 Sobic001G330700--Sobic003G019200 Sobic001G399100 Sobic001G399100 Sobic001G330700--Sobic001G399100 Sobic004G058000 Sobic004G058000 Sobic001G330700--Sobic004G058000 Sobic009G111600 Sobic009G111600 Sobic001G330700--Sobic009G111600 Sobic005G117400 Sobic005G117400 Sobic001G330700--Sobic005G117400 Sobic008G161000 Sobic008G161000 Sobic001G330700--Sobic008G161000 Sobic001G330700--Sobic003G061900 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic006G091100--Sobic001G158500 Sobic003G348400 Sobic003G348400 Sobic006G091100--Sobic003G348400 Sobic006G091100--Sobic001G085900 Sobic003G338400 Sobic003G338400 Sobic006G091100--Sobic003G338400 Sobic006G091100--Sobic004G102400 Sobic001G313500 Sobic001G313500 Sobic006G091100--Sobic001G313500 Sobic006G140000 Sobic006G140000 Sobic006G091100--Sobic006G140000 Sobic006G192700 Sobic006G192700 Sobic006G091100--Sobic006G192700 Sobic006G091100--Sobic010G016400 Sobic001G227500 Sobic001G227500 Sobic001G026900--Sobic001G227500 Sobic002G090200 Sobic002G090200 Sobic001G026900--Sobic002G090200 Sobic001G026900--Sobic004G050000 Sobic004G276100 Sobic004G276100 Sobic001G026900--Sobic004G276100 Sobic004G277000 Sobic004G277000 Sobic001G026900--Sobic004G277000 Sobic001G026900--Sobic002G083266 Sobic002G267500 Sobic002G267500 Sobic001G026900--Sobic002G267500 Sobic008G179500 Sobic008G179500 Sobic001G026900--Sobic008G179500 Sobic002G249000 Sobic002G249000 Sobic001G026900--Sobic002G249000 Sobic003G367451 Sobic003G367451 Sobic002G083266--Sobic003G367451 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic002G083266--Sobic004G272800 Sobic009G043600 Sobic009G043600 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic004G050000--Sobic002G090200 Sobic009G177800 Sobic009G177800 Sobic004G050000--Sobic009G177800 Sobic006G108400 Sobic006G108400 Sobic004G050000--Sobic006G108400 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic006G217700--Sobic010G016400 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic006G217700--Sobic007G148800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.