Gene annotation
Transcriptome id Sobic.003G194300.1
Synonym Sb03g025760
Functional annotation 50S ribosomal protein, putative, expressed
UniProt C5XNR9
Pfam PF00468
Panther DB PTHR14503 PTHR14503:SF0
NCBI CDD -
KEGG Orthology K02914; RP-L34, MRPL34, large subunit ribosomal protein L34
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G13882 : Ribosomal protein L34
RAP-DB (Rice) LOC_Os01g39010.1 : 50S ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a038402
Brachypodium KQK08374
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G250000 60S ribosomal protein L8, putative, expressed -
2 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
3 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
4 Sobic.009G218000 VIP1 protein, putative, expressed -
5 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
6 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
7 Sobic.008G118300 expressed protein -
8 Sobic.001G286100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
9 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
10 Sobic.004G356300 expressed protein -
11 Sobic.004G100100 expressed protein -
12 Sobic.004G007700 pentatricopeptide, putative, expressed -
13 Sobic.007G049900 MYB family transcription factor, putative, expressed -
14 Sobic.010G225201 - -
15 Sobic.003G326900 expressed protein -
16 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
18 Sobic.006G153200 OsClp7 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.010G039000 expressed protein -
20 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G194300 Sobic003G194300 Sobic010G250000 Sobic010G250000 Sobic003G194300--Sobic010G250000 Sobic001G167500 Sobic001G167500 Sobic003G194300--Sobic001G167500 Sobic003G388700 Sobic003G388700 Sobic003G194300--Sobic003G388700 Sobic009G218000 Sobic009G218000 Sobic003G194300--Sobic009G218000 Sobic007G140100 Sobic007G140100 Sobic003G194300--Sobic007G140100 Sobic001G309200 Sobic001G309200 Sobic003G194300--Sobic001G309200 Sobic008G118300 Sobic008G118300 Sobic003G194300--Sobic008G118300 Sobic001G286100 Sobic001G286100 Sobic003G194300--Sobic001G286100 Sobic003G113400 Sobic003G113400 Sobic003G194300--Sobic003G113400 Sobic009G063800 Sobic009G063800 Sobic010G250000--Sobic009G063800 Sobic010G250000--Sobic003G194300 Sobic003G023200 Sobic003G023200 Sobic010G250000--Sobic003G023200 Sobic008G072500 Sobic008G072500 Sobic010G250000--Sobic008G072500 Sobic010G192600 Sobic010G192600 Sobic010G250000--Sobic010G192600 Sobic006G041800 Sobic006G041800 Sobic010G250000--Sobic006G041800 Sobic007G148400 Sobic007G148400 Sobic010G250000--Sobic007G148400 Sobic010G250000--Sobic001G286100 Sobic002G276800 Sobic002G276800 Sobic010G250000--Sobic002G276800 Sobic010G134100 Sobic010G134100 Sobic001G167500--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic001G167500--Sobic001G413100 Sobic009G041800 Sobic009G041800 Sobic001G167500--Sobic009G041800 Sobic002G367800 Sobic002G367800 Sobic001G167500--Sobic002G367800 Sobic001G176900 Sobic001G176900 Sobic001G167500--Sobic001G176900 Sobic003G130000 Sobic003G130000 Sobic001G167500--Sobic003G130000 Sobic004G082700 Sobic004G082700 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G214900 Sobic001G214900 Sobic001G167500--Sobic001G214900 Sobic007G119600 Sobic007G119600 Sobic003G388700--Sobic007G119600 Sobic001G073600 Sobic001G073600 Sobic003G388700--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic003G388700--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic003G388700--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic003G388700--Sobic006G041800 Sobic006G153200 Sobic006G153200 Sobic009G218000--Sobic006G153200 Sobic009G218000--Sobic001G309200 Sobic003G167000 Sobic003G167000 Sobic009G218000--Sobic003G167000 Sobic002G217500 Sobic002G217500 Sobic009G218000--Sobic002G217500 Sobic002G422400 Sobic002G422400 Sobic009G218000--Sobic002G422400 Sobic001G352800 Sobic001G352800 Sobic009G218000--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic009G218000--Sobic001G485300 Sobic001G155200 Sobic001G155200 Sobic009G218000--Sobic001G155200 Sobic008G011800 Sobic008G011800 Sobic009G218000--Sobic008G011800 Sobic010G080900 Sobic010G080900 Sobic007G140100--Sobic010G080900 Sobic010G188900 Sobic010G188900 Sobic007G140100--Sobic010G188900 Sobic008G047500 Sobic008G047500 Sobic007G140100--Sobic008G047500 Sobic010G018900 Sobic010G018900 Sobic007G140100--Sobic010G018900 Sobic007G010200 Sobic007G010200 Sobic007G140100--Sobic007G010200 Sobic001G203600 Sobic001G203600 Sobic007G140100--Sobic001G203600 Sobic004G007700 Sobic004G007700 Sobic007G140100--Sobic004G007700 Sobic001G268300 Sobic001G268300 Sobic007G140100--Sobic001G268300 Sobic007G140100--Sobic006G153200 Sobic002G348400 Sobic002G348400 Sobic001G309200--Sobic002G348400 Sobic001G188000 Sobic001G188000 Sobic001G309200--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic001G309200--Sobic003G260600 Sobic001G117900 Sobic001G117900 Sobic001G309200--Sobic001G117900 Sobic009G066200 Sobic009G066200 Sobic001G309200--Sobic009G066200 Sobic002G308000 Sobic002G308000 Sobic001G309200--Sobic002G308000 Sobic002G392400 Sobic002G392400 Sobic001G309200--Sobic002G392400 Sobic010G153400 Sobic010G153400 Sobic001G309200--Sobic010G153400 Sobic007G086600 Sobic007G086600 Sobic001G309200--Sobic007G086600 Sobic008G118300--Sobic001G286100 Sobic002G304400 Sobic002G304400 Sobic008G118300--Sobic002G304400 Sobic004G353500 Sobic004G353500 Sobic008G118300--Sobic004G353500 Sobic008G017700 Sobic008G017700 Sobic008G118300--Sobic008G017700 Sobic004G160800 Sobic004G160800 Sobic008G118300--Sobic004G160800 Sobic008G118300--Sobic010G002800 Sobic003G418400 Sobic003G418400 Sobic008G118300--Sobic003G418400 Sobic002G037600 Sobic002G037600 Sobic008G118300--Sobic002G037600 Sobic006G271000 Sobic006G271000 Sobic008G118300--Sobic006G271000 Sobic004G069400 Sobic004G069400 Sobic001G286100--Sobic004G069400 Sobic001G286100--Sobic008G118300 Sobic001G286100--Sobic003G418400 Sobic007G201000 Sobic007G201000 Sobic001G286100--Sobic007G201000 Sobic001G286100--Sobic010G250000 Sobic001G135200 Sobic001G135200 Sobic001G286100--Sobic001G135200 Sobic001G286100--Sobic006G271000 Sobic001G286100--Sobic009G063800 Sobic001G286100--Sobic001G309200 Sobic003G113400--Sobic003G167000 Sobic003G113400--Sobic009G041800 Sobic004G334200 Sobic004G334200 Sobic003G113400--Sobic004G334200 Sobic007G191600 Sobic007G191600 Sobic003G113400--Sobic007G191600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic002G402500 Sobic002G402500 Sobic003G113400--Sobic002G402500 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.