Gene annotation
Transcriptome id Sobic.004G156400.5,Sobic.004G156400.4,Sobic.004G156400.3
Synonym Sb04g020750
Functional annotation LSM domain containing protein, expressed
UniProt A0A194YPX4
Pfam PF01423
Panther DB PTHR13829
NCBI CDD KOG3448; Predicted snRNP core protein
KEGG Orthology K12621; U6 snRNA-associated Sm-like protein LSm2
Gene Ontology GO:0006397; mRNA processing


Orthologs (automatic annotation)
TAIR AT1G03330 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os04g39444.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ95389 , KQJ95388 , PNT66786
Barley HORVU7Hr1G071700.2 , HORVU7Hr1G071700.1
Wheat TraesCS7D02G297400 , TraesCS7B02G202200 , TraesCS7A02G302100
Populus -


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cDNA sequences
Sobic.004G156400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
3 Sobic.001G364600 transmembrane protein 85, putative, expressed -
4 Sobic.001G004700 expressed protein -
5 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
6 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
7 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
8 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
9 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
10 Sobic.002G129000 RING zinc finger protein, putative, expressed -
11 Sobic.006G183000 RING zinc finger protein, putative, expressed -
12 Sobic.009G114800 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
13 Sobic.002G123200 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
14 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
15 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.002G273900 expressed protein -
17 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
18 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
19 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
20 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7


Gene co-expression network
sample Sobic004G156400 Sobic004G156400 Sobic002G092300 Sobic002G092300 Sobic004G156400--Sobic002G092300 Sobic004G250300 Sobic004G250300 Sobic004G156400--Sobic004G250300 Sobic001G364600 Sobic001G364600 Sobic004G156400--Sobic001G364600 Sobic001G004700 Sobic001G004700 Sobic004G156400--Sobic001G004700 Sobic001G136900 Sobic001G136900 Sobic004G156400--Sobic001G136900 Sobic004G060600 Sobic004G060600 Sobic004G156400--Sobic004G060600 Sobic001G152000 Sobic001G152000 Sobic004G156400--Sobic001G152000 Sobic004G305600 Sobic004G305600 Sobic004G156400--Sobic004G305600 Sobic003G405700 Sobic003G405700 Sobic004G156400--Sobic003G405700 Sobic010G279700 Sobic010G279700 Sobic002G092300--Sobic010G279700 Sobic002G092300--Sobic004G250300 Sobic004G021200 Sobic004G021200 Sobic002G092300--Sobic004G021200 Sobic007G115200 Sobic007G115200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic001G281600 Sobic001G281600 Sobic002G092300--Sobic001G281600 Sobic001G000200 Sobic001G000200 Sobic002G092300--Sobic001G000200 Sobic003G250500 Sobic003G250500 Sobic002G092300--Sobic003G250500 Sobic001G016000 Sobic001G016000 Sobic002G092300--Sobic001G016000 Sobic004G250300--Sobic002G092300 Sobic004G250300--Sobic003G405700 Sobic004G250300--Sobic003G250500 Sobic002G180000 Sobic002G180000 Sobic004G250300--Sobic002G180000 Sobic004G301900 Sobic004G301900 Sobic004G250300--Sobic004G301900 Sobic002G259400 Sobic002G259400 Sobic004G250300--Sobic002G259400 Sobic009G033900 Sobic009G033900 Sobic004G250300--Sobic009G033900 Sobic010G090900 Sobic010G090900 Sobic004G250300--Sobic010G090900 Sobic002G187801 Sobic002G187801 Sobic004G250300--Sobic002G187801 Sobic010G277100 Sobic010G277100 Sobic001G364600--Sobic010G277100 Sobic007G168600 Sobic007G168600 Sobic001G364600--Sobic007G168600 Sobic001G364600--Sobic004G060600 Sobic003G077900 Sobic003G077900 Sobic001G364600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic001G364600--Sobic002G400000 Sobic003G050600 Sobic003G050600 Sobic001G364600--Sobic003G050600 Sobic003G127300 Sobic003G127300 Sobic001G364600--Sobic003G127300 Sobic009G004600 Sobic009G004600 Sobic001G364600--Sobic009G004600 Sobic001G314500 Sobic001G314500 Sobic001G364600--Sobic001G314500 Sobic002G122600 Sobic002G122600 Sobic001G004700--Sobic002G122600 Sobic003G078800 Sobic003G078800 Sobic001G004700--Sobic003G078800 Sobic004G227300 Sobic004G227300 Sobic001G004700--Sobic004G227300 Sobic006G171700 Sobic006G171700 Sobic001G004700--Sobic006G171700 Sobic001G380500 Sobic001G380500 Sobic001G004700--Sobic001G380500 Sobic003G299000 Sobic003G299000 Sobic001G004700--Sobic003G299000 Sobic006G119800 Sobic006G119800 Sobic001G004700--Sobic006G119800 Sobic006G004600 Sobic006G004600 Sobic001G004700--Sobic006G004600 Sobic007G171950 Sobic007G171950 Sobic001G004700--Sobic007G171950 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic010G083700 Sobic010G083700 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic004G060600--Sobic003G077900 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic004G060600--Sobic001G364600 Sobic002G268400 Sobic002G268400 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic001G152000--Sobic003G405700 Sobic001G152000--Sobic006G183000 Sobic004G059000 Sobic004G059000 Sobic004G305600--Sobic004G059000 Sobic004G305600--Sobic003G405700 Sobic004G305600--Sobic003G250500 Sobic004G305600--Sobic002G256300 Sobic003G127400 Sobic003G127400 Sobic004G305600--Sobic003G127400 Sobic005G000800 Sobic005G000800 Sobic004G305600--Sobic005G000800 Sobic009G246950 Sobic009G246950 Sobic004G305600--Sobic009G246950 Sobic001G512900 Sobic001G512900 Sobic004G305600--Sobic001G512900 Sobic004G253000 Sobic004G253000 Sobic004G305600--Sobic004G253000 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic003G405700--Sobic006G183000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic003G405700--Sobic001G136900 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600
Octagon: transcription factors


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