Gene annotation
Transcriptome id Sobic.003G026200.2,Sobic.003G026200.3,Sobic.003G026200.1,Sobic.003G026200.4
Synonym Sb03g002470
Functional annotation expressed protein
UniProt C5XL77
Pfam -
Panther DB PTHR23111 PTHR23111:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53460 : -
RAP-DB (Rice) LOC_Os01g10630.2,LOC_Os01g10630.1 : expressed protein
MaizeGDB (Corn) Zm00025a022989
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
2 Sobic.002G239601 - -
3 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
4 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
5 Sobic.001G453500 expressed protein -
6 Sobic.004G097900 expressed protein -
7 Sobic.004G027300 expressed protein -
8 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
9 Sobic.002G155000 EMB1381, putative, expressed -
10 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.001G495400 PPR repeat domain containing protein, putative, expressed -
12 Sobic.003G028400 OsFBX234 - F-box domain containing protein, expressed -
13 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
14 Sobic.002G112600 zinc finger family protein, putative, expressed -
15 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
16 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
17 Sobic.004G356200 expressed protein -
18 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
19 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
20 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1


Gene co-expression network
sample Sobic003G026200 Sobic003G026200 Sobic006G140400 Sobic006G140400 Sobic003G026200--Sobic006G140400 Sobic002G239601 Sobic002G239601 Sobic003G026200--Sobic002G239601 Sobic002G386900 Sobic002G386900 Sobic003G026200--Sobic002G386900 Sobic009G163600 Sobic009G163600 Sobic003G026200--Sobic009G163600 Sobic001G453500 Sobic001G453500 Sobic003G026200--Sobic001G453500 Sobic004G097900 Sobic004G097900 Sobic003G026200--Sobic004G097900 Sobic004G027300 Sobic004G027300 Sobic003G026200--Sobic004G027300 Sobic002G386600 Sobic002G386600 Sobic003G026200--Sobic002G386600 Sobic002G155000 Sobic002G155000 Sobic003G026200--Sobic002G155000 Sobic006G140400--Sobic001G453500 Sobic010G224700 Sobic010G224700 Sobic006G140400--Sobic010G224700 Sobic002G112600 Sobic002G112600 Sobic006G140400--Sobic002G112600 Sobic006G140400--Sobic002G386900 Sobic004G215900 Sobic004G215900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic004G027400 Sobic004G027400 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000 Sobic002G239601--Sobic002G386900 Sobic001G123600 Sobic001G123600 Sobic002G239601--Sobic001G123600 Sobic002G239601--Sobic002G386600 Sobic004G356200 Sobic004G356200 Sobic002G239601--Sobic004G356200 Sobic007G034200 Sobic007G034200 Sobic002G239601--Sobic007G034200 Sobic008G123300 Sobic008G123300 Sobic002G239601--Sobic008G123300 Sobic003G360300 Sobic003G360300 Sobic002G239601--Sobic003G360300 Sobic003G299500 Sobic003G299500 Sobic002G239601--Sobic003G299500 Sobic001G200200 Sobic001G200200 Sobic002G239601--Sobic001G200200 Sobic002G386900--Sobic002G386600 Sobic002G386900--Sobic004G097900 Sobic002G386900--Sobic001G123600 Sobic006G191200 Sobic006G191200 Sobic002G386900--Sobic006G191200 Sobic002G386900--Sobic007G034200 Sobic001G051400 Sobic001G051400 Sobic002G386900--Sobic001G051400 Sobic002G386900--Sobic001G200200 Sobic002G386900--Sobic002G239601 Sobic002G292800 Sobic002G292800 Sobic002G386900--Sobic002G292800 Sobic003G425100 Sobic003G425100 Sobic009G163600--Sobic003G425100 Sobic003G436600 Sobic003G436600 Sobic009G163600--Sobic003G436600 Sobic009G163600--Sobic002G112600 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic008G163500 Sobic008G163500 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic009G163600--Sobic007G059700 Sobic009G163600--Sobic006G140400 Sobic006G111200 Sobic006G111200 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic004G151000 Sobic004G151000 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic004G097900--Sobic002G292800 Sobic004G097900--Sobic002G386900 Sobic004G097900--Sobic006G191200 Sobic001G495400 Sobic001G495400 Sobic004G097900--Sobic001G495400 Sobic006G029100 Sobic006G029100 Sobic004G097900--Sobic006G029100 Sobic004G097900--Sobic002G112600 Sobic003G218200 Sobic003G218200 Sobic004G097900--Sobic003G218200 Sobic006G170900 Sobic006G170900 Sobic004G097900--Sobic006G170900 Sobic004G106250 Sobic004G106250 Sobic004G097900--Sobic004G106250 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic007G060600 Sobic007G060600 Sobic004G027300--Sobic007G060600 Sobic002G378100 Sobic002G378100 Sobic004G027300--Sobic002G378100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic002G386600--Sobic002G386900 Sobic002G386600--Sobic006G029100 Sobic004G141800 Sobic004G141800 Sobic002G386600--Sobic004G141800 Sobic006G265600 Sobic006G265600 Sobic002G386600--Sobic006G265600 Sobic002G398700 Sobic002G398700 Sobic002G386600--Sobic002G398700 Sobic002G160700 Sobic002G160700 Sobic002G386600--Sobic002G160700 Sobic001G085800 Sobic001G085800 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000 Sobic007G075800 Sobic007G075800 Sobic002G155000--Sobic007G075800 Sobic002G031700 Sobic002G031700 Sobic002G155000--Sobic002G031700 Sobic006G128400 Sobic006G128400 Sobic002G155000--Sobic006G128400 Sobic002G317100 Sobic002G317100 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic007G132200 Sobic007G132200 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800
Octagon: transcription factors


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