Gene annotation
Transcriptome id Sobic.007G152900.2,Sobic.007G152900.1
Synonym Sb07g022680, CYL2, ATDPB2, DPB2
Functional annotation POLE2A - Putative DNA polymerase epsilon complex subunit, expressed
UniProt C5YM64 , C5YMS8
Pfam PF12213 PF04042 PF04042
Panther DB PTHR12708 PTHR12708:SF0
NCBI CDD KOG3818; DNA polymerase epsilon, subunit B
KEGG Orthology K02325; DNA polymerase epsilon subunit 2
Gene Ontology GO:0006260; DNA replication GO:0003887DNA-directed DNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G22110 : DNA polymerase epsilon subunit B2
RAP-DB (Rice) LOC_Os05g06840.1 : POLE2A - Putative DNA polymerase epsilon complex subunit, expressed
MaizeGDB (Corn) Zm00025a005386
Brachypodium KQJ98586 , PNT68251 , PNT68250
Barley HORVU3Hr1G021820.10 , HORVU3Hr1G021820.12 , HORVU3Hr1G021820.13 , HORVU3Hr1G021820.2 , HORVU3Hr1G021820.3 , HORVU3Hr1G021820.1 , HORVU3Hr1G021820.6 , HORVU3Hr1G021820.7 , HORVU3Hr1G021820.4 , HORVU3Hr1G021820.5 , HORVU3Hr1G021820.8 , HORVU3Hr1G021820.9
Wheat TraesCS3A02G118400 , TraesCS3D02G120300 , TraesCS3B02G137500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
2 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
3 Sobic.006G116500 expressed protein -
4 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
5 Sobic.001G070300 expressed protein -
6 Sobic.010G274000 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
7 Sobic.006G140100 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
8 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
9 Sobic.001G103000 DNA binding protein, putative, expressed -
10 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
11 Sobic.004G197400 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
12 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
14 Sobic.009G227600 aspartyl protease family protein, putative, expressed -
15 Sobic.002G191000 STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.008G168100 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
17 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
18 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
19 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
20 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7


Gene co-expression network
sample Sobic007G152900 Sobic007G152900 Sobic004G355500 Sobic004G355500 Sobic007G152900--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G152900--Sobic010G103700 Sobic006G116500 Sobic006G116500 Sobic007G152900--Sobic006G116500 Sobic009G088200 Sobic009G088200 Sobic007G152900--Sobic009G088200 Sobic001G070300 Sobic001G070300 Sobic007G152900--Sobic001G070300 Sobic010G274000 Sobic010G274000 Sobic007G152900--Sobic010G274000 Sobic006G140100 Sobic006G140100 Sobic007G152900--Sobic006G140100 Sobic002G280700 Sobic002G280700 Sobic007G152900--Sobic002G280700 Sobic001G103000 Sobic001G103000 Sobic007G152900--Sobic001G103000 Sobic004G355500--Sobic006G116500 Sobic001G456500 Sobic001G456500 Sobic004G355500--Sobic001G456500 Sobic004G355500--Sobic007G152900 Sobic004G355500--Sobic010G103700 Sobic001G169800 Sobic001G169800 Sobic004G355500--Sobic001G169800 Sobic004G197400 Sobic004G197400 Sobic004G355500--Sobic004G197400 Sobic004G355500--Sobic009G088200 Sobic004G355500--Sobic001G103000 Sobic008G129200 Sobic008G129200 Sobic004G355500--Sobic008G129200 Sobic003G183700 Sobic003G183700 Sobic010G103700--Sobic003G183700 Sobic003G179500 Sobic003G179500 Sobic010G103700--Sobic003G179500 Sobic006G120600 Sobic006G120600 Sobic010G103700--Sobic006G120600 Sobic006G195500 Sobic006G195500 Sobic010G103700--Sobic006G195500 Sobic006G051000 Sobic006G051000 Sobic010G103700--Sobic006G051000 Sobic009G087000 Sobic009G087000 Sobic010G103700--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic010G103700--Sobic010G147700 Sobic010G103700--Sobic006G116500 Sobic010G103700--Sobic004G355500 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic006G116500--Sobic001G070300 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic006G116500--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic009G088200--Sobic004G355500 Sobic009G088200--Sobic002G280700 Sobic009G088200--Sobic007G152900 Sobic003G396600 Sobic003G396600 Sobic009G088200--Sobic003G396600 Sobic007G079600 Sobic007G079600 Sobic009G088200--Sobic007G079600 Sobic001G078600 Sobic001G078600 Sobic009G088200--Sobic001G078600 Sobic009G088200--Sobic001G103000 Sobic010G032700 Sobic010G032700 Sobic009G088200--Sobic010G032700 Sobic005G047100 Sobic005G047100 Sobic009G088200--Sobic005G047100 Sobic001G070300--Sobic010G274000 Sobic007G100600 Sobic007G100600 Sobic001G070300--Sobic007G100600 Sobic001G070300--Sobic006G116500 Sobic002G191000 Sobic002G191000 Sobic001G070300--Sobic002G191000 Sobic009G181500 Sobic009G181500 Sobic001G070300--Sobic009G181500 Sobic001G070300--Sobic004G197400 Sobic005G144600 Sobic005G144600 Sobic001G070300--Sobic005G144600 Sobic001G142000 Sobic001G142000 Sobic001G070300--Sobic001G142000 Sobic001G070300--Sobic004G047100 Sobic010G274000--Sobic001G070300 Sobic010G274000--Sobic009G181500 Sobic010G274000--Sobic005G144600 Sobic010G274000--Sobic002G191000 Sobic010G274000--Sobic001G078600 Sobic010G274000--Sobic004G197400 Sobic010G274000--Sobic007G100600 Sobic006G102900 Sobic006G102900 Sobic010G274000--Sobic006G102900 Sobic010G274000--Sobic006G116500 Sobic006G140100--Sobic007G152900 Sobic010G054600 Sobic010G054600 Sobic006G140100--Sobic010G054600 Sobic006G140100--Sobic006G116500 Sobic006G140100--Sobic001G070300 Sobic006G140100--Sobic004G197400 Sobic006G140100--Sobic004G355500 Sobic006G140100--Sobic001G142000 Sobic009G214100 Sobic009G214100 Sobic006G140100--Sobic009G214100 Sobic006G140100--Sobic002G280700 Sobic002G280700--Sobic009G088200 Sobic001G528600 Sobic001G528600 Sobic002G280700--Sobic001G528600 Sobic002G280700--Sobic007G152900 Sobic002G280700--Sobic010G032700 Sobic002G280700--Sobic003G396600 Sobic001G371100 Sobic001G371100 Sobic002G280700--Sobic001G371100 Sobic003G294100 Sobic003G294100 Sobic002G280700--Sobic003G294100 Sobic005G164700 Sobic005G164700 Sobic002G280700--Sobic005G164700 Sobic001G397000 Sobic001G397000 Sobic002G280700--Sobic001G397000 Sobic001G103000--Sobic010G274000 Sobic001G103000--Sobic004G355500 Sobic001G103000--Sobic002G191000 Sobic007G139500 Sobic007G139500 Sobic001G103000--Sobic007G139500 Sobic003G135400 Sobic003G135400 Sobic001G103000--Sobic003G135400 Sobic003G410600 Sobic003G410600 Sobic001G103000--Sobic003G410600 Sobic001G103000--Sobic004G197400 Sobic001G103000--Sobic007G152900 Sobic001G103000--Sobic006G116500
Octagon: transcription factors


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