Gene annotation
Transcriptome id Sobic.009G227600.1
Synonym Sb09g028060
Functional annotation aspartyl protease family protein, putative, expressed
UniProt C5YVF6
Pfam PF00026 PF14541
Panther DB PTHR13683 PTHR13683:SF349
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G12700 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os05g48330.1 : aspartyl protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036565 , Zm00025a044517 , Zm00025a044516 , Zm00025a028053 , Zm00025a038831
Brachypodium KQK09188 , KQK04960
Barley HORVU3Hr1G062570.11 , HORVU3Hr1G062570.10 , HORVU3Hr1G062570.12 , HORVU1Hr1G085500.6 , HORVU1Hr1G085500.5 , HORVU3Hr1G062570.3 , HORVU3Hr1G062570.9 , HORVU3Hr1G062570.8 , HORVU1Hr1G085500.4 , HORVU1Hr1G085500.1 , HORVU1Hr1G085500.3 , HORVU1Hr1G085500.2 , HORVU1Hr1G085500.8 , HORVU3Hr1G062570.5 , HORVU3Hr1G062570.7 , HORVU3Hr1G062570.6 , HORVU3Hr1G062570.1 , HORVU3Hr1G062570.4 , HORVU3Hr1G062570.2
Wheat TraesCS3A02G268100 , TraesCS3D02G268200 , TraesCS3D02G268200 , TraesCS1B02G414800 , TraesCS3B02G302500 , TraesCS1D02G395200 , TraesCS3A02G268100 , TraesCS1A02G387400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G227600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G403100 laccase precursor protein, putative, expressed K05909: laccase
2 Sobic.007G152900 POLE2A - Putative DNA polymerase epsilon complex subunit, expressed K02325: DNA polymerase epsilon subunit 2
3 Sobic.001G070300 expressed protein -
4 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
5 Sobic.004G238700 CSLA6 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
6 Sobic.004G271500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
7 Sobic.006G116500 expressed protein -
8 Sobic.002G191000 STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.001G103000 DNA binding protein, putative, expressed -
10 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
11 Sobic.003G153600 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
14 Sobic.006G144700 BRCA1 C Terminus domain containing protein, expressed K10683: BRCA1-associated RING domain protein 1
15 Sobic.010G274000 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
16 Sobic.010G067900 ORC1 - Putative origin recognition complex subunit 1, expressed K02603: origin recognition complex subunit 1
17 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
18 Sobic.010G003100 monocopper oxidase, putative, expressed -
19 Sobic.006G076400 histone H3, putative, expressed K11253: histone H3
20 Sobic.001G439400 glycosyl hydrolase family 10 protein, putative, expressed -


Gene co-expression network
sample Sobic009G227600 Sobic009G227600 Sobic001G403100 Sobic001G403100 Sobic009G227600--Sobic001G403100 Sobic007G152900 Sobic007G152900 Sobic009G227600--Sobic007G152900 Sobic001G070300 Sobic001G070300 Sobic009G227600--Sobic001G070300 Sobic004G355500 Sobic004G355500 Sobic009G227600--Sobic004G355500 Sobic004G238700 Sobic004G238700 Sobic009G227600--Sobic004G238700 Sobic004G271500 Sobic004G271500 Sobic009G227600--Sobic004G271500 Sobic006G116500 Sobic006G116500 Sobic009G227600--Sobic006G116500 Sobic002G191000 Sobic002G191000 Sobic009G227600--Sobic002G191000 Sobic001G103000 Sobic001G103000 Sobic009G227600--Sobic001G103000 Sobic001G403100--Sobic009G227600 Sobic002G208000 Sobic002G208000 Sobic001G403100--Sobic002G208000 Sobic003G415400 Sobic003G415400 Sobic001G403100--Sobic003G415400 Sobic004G009900 Sobic004G009900 Sobic001G403100--Sobic004G009900 Sobic003G236600 Sobic003G236600 Sobic001G403100--Sobic003G236600 Sobic001G403100--Sobic007G152900 Sobic003G153600 Sobic003G153600 Sobic001G403100--Sobic003G153600 Sobic006G133300 Sobic006G133300 Sobic001G403100--Sobic006G133300 Sobic006G003100 Sobic006G003100 Sobic001G403100--Sobic006G003100 Sobic007G152900--Sobic004G355500 Sobic010G103700 Sobic010G103700 Sobic007G152900--Sobic010G103700 Sobic007G152900--Sobic006G116500 Sobic009G088200 Sobic009G088200 Sobic007G152900--Sobic009G088200 Sobic007G152900--Sobic001G070300 Sobic010G274000 Sobic010G274000 Sobic007G152900--Sobic010G274000 Sobic006G140100 Sobic006G140100 Sobic007G152900--Sobic006G140100 Sobic002G280700 Sobic002G280700 Sobic007G152900--Sobic002G280700 Sobic007G152900--Sobic001G103000 Sobic001G070300--Sobic010G274000 Sobic007G100600 Sobic007G100600 Sobic001G070300--Sobic007G100600 Sobic001G070300--Sobic006G116500 Sobic001G070300--Sobic002G191000 Sobic009G181500 Sobic009G181500 Sobic001G070300--Sobic009G181500 Sobic004G197400 Sobic004G197400 Sobic001G070300--Sobic004G197400 Sobic005G144600 Sobic005G144600 Sobic001G070300--Sobic005G144600 Sobic001G142000 Sobic001G142000 Sobic001G070300--Sobic001G142000 Sobic004G047100 Sobic004G047100 Sobic001G070300--Sobic004G047100 Sobic004G355500--Sobic006G116500 Sobic001G456500 Sobic001G456500 Sobic004G355500--Sobic001G456500 Sobic004G355500--Sobic007G152900 Sobic004G355500--Sobic010G103700 Sobic001G169800 Sobic001G169800 Sobic004G355500--Sobic001G169800 Sobic004G355500--Sobic004G197400 Sobic004G355500--Sobic009G088200 Sobic004G355500--Sobic001G103000 Sobic008G129200 Sobic008G129200 Sobic004G355500--Sobic008G129200 Sobic010G230000 Sobic010G230000 Sobic004G238700--Sobic010G230000 Sobic001G439400 Sobic001G439400 Sobic004G238700--Sobic001G439400 Sobic007G176800 Sobic007G176800 Sobic004G238700--Sobic007G176800 Sobic004G238700--Sobic001G142000 Sobic004G238700--Sobic001G456500 Sobic004G238700--Sobic006G116500 Sobic010G204700 Sobic010G204700 Sobic004G238700--Sobic010G204700 Sobic002G258300 Sobic002G258300 Sobic004G238700--Sobic002G258300 Sobic004G238700--Sobic009G227600 Sobic001G403200 Sobic001G403200 Sobic004G271500--Sobic001G403200 Sobic004G271500--Sobic002G191000 Sobic010G176800 Sobic010G176800 Sobic004G271500--Sobic010G176800 Sobic001G029800 Sobic001G029800 Sobic004G271500--Sobic001G029800 Sobic009G079900 Sobic009G079900 Sobic004G271500--Sobic009G079900 Sobic002G158900 Sobic002G158900 Sobic004G271500--Sobic002G158900 Sobic001G314000 Sobic001G314000 Sobic004G271500--Sobic001G314000 Sobic002G020500 Sobic002G020500 Sobic004G271500--Sobic002G020500 Sobic001G144200 Sobic001G144200 Sobic004G271500--Sobic001G144200 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic006G116500--Sobic001G169800 Sobic006G116500--Sobic001G070300 Sobic003G179500 Sobic003G179500 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic006G116500--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic006G116500--Sobic004G331600 Sobic006G116500--Sobic004G047100 Sobic003G118100 Sobic003G118100 Sobic002G191000--Sobic003G118100 Sobic006G035600 Sobic006G035600 Sobic002G191000--Sobic006G035600 Sobic010G051100 Sobic010G051100 Sobic002G191000--Sobic010G051100 Sobic002G191000--Sobic001G029800 Sobic010G008900 Sobic010G008900 Sobic002G191000--Sobic010G008900 Sobic002G191000--Sobic001G070300 Sobic002G191000--Sobic010G274000 Sobic002G191000--Sobic004G271500 Sobic002G191000--Sobic009G181500 Sobic001G103000--Sobic010G274000 Sobic001G103000--Sobic004G355500 Sobic001G103000--Sobic002G191000 Sobic007G139500 Sobic007G139500 Sobic001G103000--Sobic007G139500 Sobic003G135400 Sobic003G135400 Sobic001G103000--Sobic003G135400 Sobic003G410600 Sobic003G410600 Sobic001G103000--Sobic003G410600 Sobic001G103000--Sobic004G197400 Sobic001G103000--Sobic007G152900 Sobic001G103000--Sobic006G116500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.