Gene annotation
Transcriptome id Sobic.006G144700.1
Synonym Sb06g022340, ROW1, ATBARD1, BARD1
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt C5YC03
Pfam PF00097 PF13771 PF00533
Panther DB PTHR13763
NCBI CDD KOG4362; Transcriptional regulator BRCA1
KEGG Orthology K10683; BRCA1-associated RING domain protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04020 : breast cancer associated RING 1
RAP-DB (Rice) LOC_Os04g43300.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010677
Brachypodium PNT61470 , PNT61469 , KQJ83555 , KQJ83554 , KQJ83557 , KQJ83556 , KQJ83551 , KQJ83553 , KQJ83552
Barley HORVU2Hr1G088840.8 , HORVU2Hr1G088840.9 , HORVU2Hr1G088840.4 , HORVU2Hr1G088840.5 , HORVU2Hr1G088840.6 , HORVU2Hr1G088840.7 , HORVU2Hr1G088840.1 , HORVU2Hr1G088840.2 , HORVU2Hr1G088840.3 , HORVU2Hr1G088840.16 , HORVU2Hr1G088840.14 , HORVU2Hr1G088840.15 , HORVU2Hr1G088840.12 , HORVU2Hr1G088840.13 , HORVU2Hr1G088840.10 , HORVU2Hr1G088840.11
Wheat TraesCS2A02G384900 , TraesCS2D02G381600 , TraesCS2D02G381600 , TraesCS2B02G401900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G191000 STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
2 Sobic.007G129000 nucleobase-ascorbate transporter, putative, expressed -
3 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
4 Sobic.010G067900 ORC1 - Putative origin recognition complex subunit 1, expressed K02603: origin recognition complex subunit 1
5 Sobic.006G172200 glycosyl transferase 8 domain containing protein, putative, expressed -
6 Sobic.001G146900 expressed protein -
7 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
8 Sobic.004G271500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
9 Sobic.004G321400 BRUSHY 1, putative, expressed -
10 Sobic.001G507000 expressed protein -
11 Sobic.001G103000 DNA binding protein, putative, expressed -
12 Sobic.010G067800 integral membrane transporter family protein, putative, expressed -
13 Sobic.007G139500 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
14 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
15 Sobic.001G051300 BEE 1, putative, expressed -
16 Sobic.010G003100 monocopper oxidase, putative, expressed -
17 Sobic.007G152900 POLE2A - Putative DNA polymerase epsilon complex subunit, expressed K02325: DNA polymerase epsilon subunit 2
18 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
19 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
20 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5


Gene co-expression network
sample Sobic006G144700 Sobic006G144700 Sobic002G191000 Sobic002G191000 Sobic006G144700--Sobic002G191000 Sobic007G129000 Sobic007G129000 Sobic006G144700--Sobic007G129000 Sobic009G087000 Sobic009G087000 Sobic006G144700--Sobic009G087000 Sobic010G067900 Sobic010G067900 Sobic006G144700--Sobic010G067900 Sobic006G172200 Sobic006G172200 Sobic006G144700--Sobic006G172200 Sobic001G146900 Sobic001G146900 Sobic006G144700--Sobic001G146900 Sobic010G103700 Sobic010G103700 Sobic006G144700--Sobic010G103700 Sobic004G271500 Sobic004G271500 Sobic006G144700--Sobic004G271500 Sobic004G321400 Sobic004G321400 Sobic006G144700--Sobic004G321400 Sobic003G118100 Sobic003G118100 Sobic002G191000--Sobic003G118100 Sobic006G035600 Sobic006G035600 Sobic002G191000--Sobic006G035600 Sobic010G051100 Sobic010G051100 Sobic002G191000--Sobic010G051100 Sobic001G029800 Sobic001G029800 Sobic002G191000--Sobic001G029800 Sobic010G008900 Sobic010G008900 Sobic002G191000--Sobic010G008900 Sobic001G070300 Sobic001G070300 Sobic002G191000--Sobic001G070300 Sobic010G274000 Sobic010G274000 Sobic002G191000--Sobic010G274000 Sobic002G191000--Sobic004G271500 Sobic009G181500 Sobic009G181500 Sobic002G191000--Sobic009G181500 Sobic007G129000--Sobic006G144700 Sobic010G265900 Sobic010G265900 Sobic007G129000--Sobic010G265900 Sobic009G208900 Sobic009G208900 Sobic007G129000--Sobic009G208900 Sobic004G036800 Sobic004G036800 Sobic007G129000--Sobic004G036800 Sobic001G080200 Sobic001G080200 Sobic007G129000--Sobic001G080200 Sobic004G286700 Sobic004G286700 Sobic007G129000--Sobic004G286700 Sobic002G158900 Sobic002G158900 Sobic007G129000--Sobic002G158900 Sobic003G256900 Sobic003G256900 Sobic007G129000--Sobic003G256900 Sobic001G468500 Sobic001G468500 Sobic007G129000--Sobic001G468500 Sobic010G147700 Sobic010G147700 Sobic009G087000--Sobic010G147700 Sobic003G183700 Sobic003G183700 Sobic009G087000--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic009G087000--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic010G067900--Sobic002G191000 Sobic008G147500 Sobic008G147500 Sobic010G067900--Sobic008G147500 Sobic010G067900--Sobic010G147700 Sobic010G067900--Sobic001G029800 Sobic010G067900--Sobic003G118100 Sobic010G067900--Sobic006G029300 Sobic010G067900--Sobic009G087000 Sobic010G067900--Sobic004G271500 Sobic010G067900--Sobic010G103700 Sobic009G073400 Sobic009G073400 Sobic006G172200--Sobic009G073400 Sobic010G054100 Sobic010G054100 Sobic006G172200--Sobic010G054100 Sobic006G172200--Sobic006G144700 Sobic003G345200 Sobic003G345200 Sobic006G172200--Sobic003G345200 Sobic010G067800 Sobic010G067800 Sobic006G172200--Sobic010G067800 Sobic004G119700 Sobic004G119700 Sobic006G172200--Sobic004G119700 Sobic002G214200 Sobic002G214200 Sobic006G172200--Sobic002G214200 Sobic002G351700 Sobic002G351700 Sobic006G172200--Sobic002G351700 Sobic001G507000 Sobic001G507000 Sobic006G172200--Sobic001G507000 Sobic009G172950 Sobic009G172950 Sobic001G146900--Sobic009G172950 Sobic001G146900--Sobic009G087000 Sobic001G146900--Sobic003G183700 Sobic001G456500 Sobic001G456500 Sobic001G146900--Sobic001G456500 Sobic001G083300 Sobic001G083300 Sobic001G146900--Sobic001G083300 Sobic002G303800 Sobic002G303800 Sobic001G146900--Sobic002G303800 Sobic003G444300 Sobic003G444300 Sobic001G146900--Sobic003G444300 Sobic001G146900--Sobic004G321400 Sobic001G169800 Sobic001G169800 Sobic001G146900--Sobic001G169800 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic006G120600 Sobic006G120600 Sobic010G103700--Sobic006G120600 Sobic006G195500 Sobic006G195500 Sobic010G103700--Sobic006G195500 Sobic006G051000 Sobic006G051000 Sobic010G103700--Sobic006G051000 Sobic010G103700--Sobic009G087000 Sobic010G103700--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic010G103700--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic010G103700--Sobic004G355500 Sobic001G403200 Sobic001G403200 Sobic004G271500--Sobic001G403200 Sobic004G271500--Sobic002G191000 Sobic010G176800 Sobic010G176800 Sobic004G271500--Sobic010G176800 Sobic004G271500--Sobic001G029800 Sobic009G079900 Sobic009G079900 Sobic004G271500--Sobic009G079900 Sobic004G271500--Sobic002G158900 Sobic001G314000 Sobic001G314000 Sobic004G271500--Sobic001G314000 Sobic002G020500 Sobic002G020500 Sobic004G271500--Sobic002G020500 Sobic001G144200 Sobic001G144200 Sobic004G271500--Sobic001G144200 Sobic004G321400--Sobic003G183700 Sobic004G321400--Sobic009G087000 Sobic004G321400--Sobic005G110535 Sobic002G290000 Sobic002G290000 Sobic004G321400--Sobic002G290000 Sobic004G321400--Sobic003G369200 Sobic004G321400--Sobic008G129200 Sobic004G095200 Sobic004G095200 Sobic004G321400--Sobic004G095200 Sobic004G321400--Sobic009G172950 Sobic004G321400--Sobic004G331600
Octagon: transcription factors


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