Gene annotation
Transcriptome id Sobic.001G439400.1,Sobic.001G439400.2
Synonym Sb01g041310
Functional annotation glycosyl hydrolase family 10 protein, putative, expressed
UniProt A0A1Z5SAY2 , C5WR04
Pfam PF00331
Panther DB PTHR31490 PTHR31490:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G38650 : Glycosyl hydrolase family 10 protein
RAP-DB (Rice) LOC_Os03g14010.2,LOC_Os03g14010.3 : glycosyl hydrolase family 10 protein, putative, expressed
MaizeGDB (Corn) Zm00025a001535
Brachypodium KQK22604
Barley HORVU4Hr1G063790.28 , HORVU4Hr1G063790.29 , HORVU4Hr1G063790.20 , HORVU4Hr1G063790.21 , HORVU4Hr1G063790.22 , HORVU4Hr1G063790.23 , HORVU4Hr1G063790.24 , HORVU4Hr1G063790.25 , HORVU4Hr1G063790.26 , HORVU4Hr1G063790.27 , HORVU4Hr1G063790.19 , HORVU4Hr1G063790.18 , HORVU4Hr1G063790.15 , HORVU4Hr1G063790.14 , HORVU4Hr1G063790.17 , HORVU4Hr1G063790.16 , HORVU4Hr1G063790.11 , HORVU4Hr1G063790.10 , HORVU4Hr1G063790.13 , HORVU4Hr1G063790.12 , HORVU4Hr1G063790.9 , HORVU4Hr1G063790.8 , HORVU4Hr1G063790.1 , HORVU4Hr1G063790.3 , HORVU4Hr1G063790.2 , HORVU4Hr1G063790.5 , HORVU4Hr1G063790.4 , HORVU4Hr1G063790.7 , HORVU4Hr1G063790.6
Wheat TraesCS4A02G071100 , TraesCS4A02G071100 , TraesCS4B02G227000 , TraesCS4D02G227700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G238700 CSLA6 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
2 Sobic.010G204700 LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.004G238801 - -
4 Sobic.005G024000 rhamnogalacturonate lyase, putative, expressed K18195: RGL4, rhamnogalacturonan endolyase
5 Sobic.003G444000 WRKY17, expressed -
6 Sobic.010G230000 monocopper oxidase, putative, expressed -
7 Sobic.008G119900 OsSub63 - Putative Subtilisin homologue, expressed -
8 Sobic.001G009100 expressed protein -
9 Sobic.001G146900 expressed protein -
10 Sobic.005G071250 - -
11 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
12 Sobic.006G235600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@beta-D-xylosidase, putative, expressed K15920: xylan 1,4-beta-xylosidase
13 Sobic.004G015100 - -
14 Sobic.002G345500 DEF3 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.006G144101 - -
16 Sobic.008G031000 LTPL26 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.002G162100 DEFL34 - Defensin and Defensin-like DEFL family, expressed -
19 Sobic.004G014700 THION20 - Plant thionin family protein precursor, putative, expressed -
20 Sobic.005G153300 - -


Gene co-expression network
sample Sobic001G439400 Sobic001G439400 Sobic004G238700 Sobic004G238700 Sobic001G439400--Sobic004G238700 Sobic010G204700 Sobic010G204700 Sobic001G439400--Sobic010G204700 Sobic004G238801 Sobic004G238801 Sobic001G439400--Sobic004G238801 Sobic005G024000 Sobic005G024000 Sobic001G439400--Sobic005G024000 Sobic003G444000 Sobic003G444000 Sobic001G439400--Sobic003G444000 Sobic010G230000 Sobic010G230000 Sobic001G439400--Sobic010G230000 Sobic008G119900 Sobic008G119900 Sobic001G439400--Sobic008G119900 Sobic001G009100 Sobic001G009100 Sobic001G439400--Sobic001G009100 Sobic001G146900 Sobic001G146900 Sobic001G439400--Sobic001G146900 Sobic004G238700--Sobic010G230000 Sobic004G238700--Sobic001G439400 Sobic007G176800 Sobic007G176800 Sobic004G238700--Sobic007G176800 Sobic001G142000 Sobic001G142000 Sobic004G238700--Sobic001G142000 Sobic001G456500 Sobic001G456500 Sobic004G238700--Sobic001G456500 Sobic006G116500 Sobic006G116500 Sobic004G238700--Sobic006G116500 Sobic004G238700--Sobic010G204700 Sobic002G258300 Sobic002G258300 Sobic004G238700--Sobic002G258300 Sobic009G227600 Sobic009G227600 Sobic004G238700--Sobic009G227600 Sobic003G374100 Sobic003G374100 Sobic010G204700--Sobic003G374100 Sobic005G020100 Sobic005G020100 Sobic010G204700--Sobic005G020100 Sobic010G204700--Sobic010G230000 Sobic007G121650 Sobic007G121650 Sobic010G204700--Sobic007G121650 Sobic007G007800 Sobic007G007800 Sobic010G204700--Sobic007G007800 Sobic010G204700--Sobic004G238801 Sobic010G204700--Sobic003G444000 Sobic006G111100 Sobic006G111100 Sobic010G204700--Sobic006G111100 Sobic010G204700--Sobic001G439400 Sobic004G238801--Sobic007G121650 Sobic010G178300 Sobic010G178300 Sobic004G238801--Sobic010G178300 Sobic005G157300 Sobic005G157300 Sobic004G238801--Sobic005G157300 Sobic004G238801--Sobic010G204700 Sobic002G272300 Sobic002G272300 Sobic004G238801--Sobic002G272300 Sobic001G148450 Sobic001G148450 Sobic004G238801--Sobic001G148450 Sobic001G377700 Sobic001G377700 Sobic004G238801--Sobic001G377700 Sobic003G320300 Sobic003G320300 Sobic004G238801--Sobic003G320300 Sobic004G238801--Sobic001G439400 Sobic005G071250 Sobic005G071250 Sobic005G024000--Sobic005G071250 Sobic006G178900 Sobic006G178900 Sobic005G024000--Sobic006G178900 Sobic005G152400 Sobic005G152400 Sobic005G024000--Sobic005G152400 Sobic004G015200 Sobic004G015200 Sobic005G024000--Sobic004G015200 Sobic006G006100 Sobic006G006100 Sobic005G024000--Sobic006G006100 Sobic006G007001 Sobic006G007001 Sobic005G024000--Sobic006G007001 Sobic010G129300 Sobic010G129300 Sobic005G024000--Sobic010G129300 Sobic005G081800 Sobic005G081800 Sobic005G024000--Sobic005G081800 Sobic004G029500 Sobic004G029500 Sobic005G024000--Sobic004G029500 Sobic003G411100 Sobic003G411100 Sobic003G444000--Sobic003G411100 Sobic008G031000 Sobic008G031000 Sobic003G444000--Sobic008G031000 Sobic001G324600 Sobic001G324600 Sobic003G444000--Sobic001G324600 Sobic003G274000 Sobic003G274000 Sobic003G444000--Sobic003G274000 Sobic002G345500 Sobic002G345500 Sobic003G444000--Sobic002G345500 Sobic004G015100 Sobic004G015100 Sobic003G444000--Sobic004G015100 Sobic006G144101 Sobic006G144101 Sobic003G444000--Sobic006G144101 Sobic008G048600 Sobic008G048600 Sobic003G444000--Sobic008G048600 Sobic004G090400 Sobic004G090400 Sobic003G444000--Sobic004G090400 Sobic010G230000--Sobic010G204700 Sobic010G230000--Sobic001G456500 Sobic010G230000--Sobic004G238700 Sobic004G229200 Sobic004G229200 Sobic010G230000--Sobic004G229200 Sobic010G230000--Sobic001G142000 Sobic006G081800 Sobic006G081800 Sobic010G230000--Sobic006G081800 Sobic004G075900 Sobic004G075900 Sobic010G230000--Sobic004G075900 Sobic010G230000--Sobic007G176800 Sobic002G128000 Sobic002G128000 Sobic010G230000--Sobic002G128000 Sobic001G396600 Sobic001G396600 Sobic008G119900--Sobic001G396600 Sobic010G029450 Sobic010G029450 Sobic008G119900--Sobic010G029450 Sobic005G080800 Sobic005G080800 Sobic008G119900--Sobic005G080800 Sobic005G130900 Sobic005G130900 Sobic008G119900--Sobic005G130900 Sobic001G349600 Sobic001G349600 Sobic008G119900--Sobic001G349600 Sobic009G202700 Sobic009G202700 Sobic008G119900--Sobic009G202700 Sobic002G399700 Sobic002G399700 Sobic008G119900--Sobic002G399700 Sobic002G058000 Sobic002G058000 Sobic008G119900--Sobic002G058000 Sobic004G315900 Sobic004G315900 Sobic008G119900--Sobic004G315900 Sobic004G195400 Sobic004G195400 Sobic001G009100--Sobic004G195400 Sobic004G014700 Sobic004G014700 Sobic001G009100--Sobic004G014700 Sobic001G009100--Sobic008G048600 Sobic006G189500 Sobic006G189500 Sobic001G009100--Sobic006G189500 Sobic001G009100--Sobic003G411100 Sobic006G131100 Sobic006G131100 Sobic001G009100--Sobic006G131100 Sobic002G076600 Sobic002G076600 Sobic001G009100--Sobic002G076600 Sobic001G009100--Sobic001G324600 Sobic008G123350 Sobic008G123350 Sobic001G009100--Sobic008G123350 Sobic009G172950 Sobic009G172950 Sobic001G146900--Sobic009G172950 Sobic009G087000 Sobic009G087000 Sobic001G146900--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic001G146900--Sobic003G183700 Sobic001G146900--Sobic001G456500 Sobic001G083300 Sobic001G083300 Sobic001G146900--Sobic001G083300 Sobic002G303800 Sobic002G303800 Sobic001G146900--Sobic002G303800 Sobic003G444300 Sobic003G444300 Sobic001G146900--Sobic003G444300 Sobic004G321400 Sobic004G321400 Sobic001G146900--Sobic004G321400 Sobic001G169800 Sobic001G169800 Sobic001G146900--Sobic001G169800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.