Gene annotation
Transcriptome id Sobic.009G237200.1
Synonym BBC1, RSU2, ATBBC1, Sb09g028960
Functional annotation expressed high in CK60 (an inefficient nitrogen user) (PubMedID : 28697783)
ribosomal protein L13( (PubMedID : 26759170,(PubMedID : 24597475)
ribosomal protein L13, putative, expressed
UniProt C5YVY9
Pfam PF01294
Panther DB PTHR11722 PTHR11722:SF1
NCBI CDD KOG3295; 60S Ribosomal protein L13
KEGG Orthology K02873; RP-L13e, large subunit ribosomal protein L13e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G49010 : breast basic conserved 1
RAP-DB (Rice) LOC_Os03g37970.1 : ribosomal protein L13, putative, expressed
MaizeGDB (Corn) Zm00025a039272 , Zm00025a043030 , Zm00025a026228
Brachypodium KQJ95272 , KQJ92918
Barley HORVU7Hr1G067060.2 , HORVU7Hr1G067060.3 , HORVU7Hr1G067060.1
Wheat TraesCS7A02G296800 , TraesCS7D02G292800 , TraesCS6B02G064300 , TraesCS6D02G055400 , TraesCS6B02G064300 , TraesCS7B02G189800 , TraesCS7B02G189800 , TraesCS6A02G047900 , TraesCS6A02G047900
Populus -


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cDNA sequences
Sobic.009G237200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G376400 Brix domain containing protein, putative, expressed K14859: ribosome biogenesis protein SSF1/2
2 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
3 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
4 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
5 Sobic.002G408900 adenyl cyclase, putative, expressed -
6 Sobic.006G155100 expressed protein -
7 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
8 Sobic.004G291400 rho guanine nucleotide exchange factor, putative, expressed -
9 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
10 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
11 Sobic.007G071900 GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
12 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
13 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.002G160700 WD domain, G-beta repeat domain containing protein, expressed K12880: THO complex subunit 3
15 Sobic.001G358500 GA20734-PA, putative, expressed -
16 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
17 Sobic.005G108801 - -
18 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
19 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
20 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5


Gene co-expression network
sample Sobic009G237200 Sobic009G237200 Sobic001G376400 Sobic001G376400 Sobic009G237200--Sobic001G376400 Sobic002G394600 Sobic002G394600 Sobic009G237200--Sobic002G394600 Sobic001G251600 Sobic001G251600 Sobic009G237200--Sobic001G251600 Sobic006G020900 Sobic006G020900 Sobic009G237200--Sobic006G020900 Sobic002G408900 Sobic002G408900 Sobic009G237200--Sobic002G408900 Sobic006G155100 Sobic006G155100 Sobic009G237200--Sobic006G155100 Sobic004G171200 Sobic004G171200 Sobic009G237200--Sobic004G171200 Sobic004G291400 Sobic004G291400 Sobic009G237200--Sobic004G291400 Sobic002G412700 Sobic002G412700 Sobic009G237200--Sobic002G412700 Sobic003G275600 Sobic003G275600 Sobic001G376400--Sobic003G275600 Sobic010G206300 Sobic010G206300 Sobic001G376400--Sobic010G206300 Sobic008G160000 Sobic008G160000 Sobic001G376400--Sobic008G160000 Sobic001G455800 Sobic001G455800 Sobic001G376400--Sobic001G455800 Sobic009G249800 Sobic009G249800 Sobic001G376400--Sobic009G249800 Sobic001G376400--Sobic009G237200 Sobic004G027500 Sobic004G027500 Sobic001G376400--Sobic004G027500 Sobic004G340400 Sobic004G340400 Sobic001G376400--Sobic004G340400 Sobic001G501400 Sobic001G501400 Sobic001G376400--Sobic001G501400 Sobic002G341800 Sobic002G341800 Sobic002G394600--Sobic002G341800 Sobic006G044600 Sobic006G044600 Sobic002G394600--Sobic006G044600 Sobic002G014400 Sobic002G014400 Sobic002G394600--Sobic002G014400 Sobic002G394600--Sobic001G251600 Sobic009G190300 Sobic009G190300 Sobic002G394600--Sobic009G190300 Sobic004G194900 Sobic004G194900 Sobic002G394600--Sobic004G194900 Sobic001G404100 Sobic001G404100 Sobic002G394600--Sobic001G404100 Sobic007G177300 Sobic007G177300 Sobic002G394600--Sobic007G177300 Sobic004G310500 Sobic004G310500 Sobic002G394600--Sobic004G310500 Sobic006G010400 Sobic006G010400 Sobic001G251600--Sobic006G010400 Sobic002G423500 Sobic002G423500 Sobic001G251600--Sobic002G423500 SobicK004100 SobicK004100 Sobic001G251600--SobicK004100 Sobic004G208500 Sobic004G208500 Sobic001G251600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic001G251600--Sobic001G145400 Sobic001G251600--Sobic009G249800 Sobic001G251600--Sobic002G408900 Sobic001G251600--Sobic002G394600 Sobic001G251600--Sobic002G412700 Sobic001G473400 Sobic001G473400 Sobic006G020900--Sobic001G473400 Sobic002G410700 Sobic002G410700 Sobic006G020900--Sobic002G410700 Sobic003G388700 Sobic003G388700 Sobic006G020900--Sobic003G388700 Sobic005G105500 Sobic005G105500 Sobic006G020900--Sobic005G105500 Sobic006G020900--Sobic004G291400 Sobic001G304000 Sobic001G304000 Sobic006G020900--Sobic001G304000 Sobic009G256000 Sobic009G256000 Sobic006G020900--Sobic009G256000 Sobic003G392600 Sobic003G392600 Sobic006G020900--Sobic003G392600 Sobic009G240700 Sobic009G240700 Sobic006G020900--Sobic009G240700 Sobic002G150700 Sobic002G150700 Sobic002G408900--Sobic002G150700 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic001G015400 Sobic001G015400 Sobic002G408900--Sobic001G015400 Sobic002G398700 Sobic002G398700 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic001G099900 Sobic001G099900 Sobic002G408900--Sobic001G099900 Sobic008G090900 Sobic008G090900 Sobic006G155100--Sobic008G090900 Sobic004G003900 Sobic004G003900 Sobic006G155100--Sobic004G003900 Sobic001G433100 Sobic001G433100 Sobic006G155100--Sobic001G433100 Sobic010G098200 Sobic010G098200 Sobic006G155100--Sobic010G098200 Sobic001G478600 Sobic001G478600 Sobic006G155100--Sobic001G478600 Sobic006G155100--Sobic004G171200 Sobic002G356200 Sobic002G356200 Sobic006G155100--Sobic002G356200 Sobic001G346600 Sobic001G346600 Sobic006G155100--Sobic001G346600 Sobic002G298100 Sobic002G298100 Sobic006G155100--Sobic002G298100 Sobic008G051200 Sobic008G051200 Sobic004G171200--Sobic008G051200 Sobic004G171200--Sobic002G298100 Sobic001G434200 Sobic001G434200 Sobic004G171200--Sobic001G434200 Sobic010G059500 Sobic010G059500 Sobic004G171200--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G171200--Sobic001G493200 Sobic001G120500 Sobic001G120500 Sobic004G171200--Sobic001G120500 Sobic009G239200 Sobic009G239200 Sobic004G171200--Sobic009G239200 Sobic004G171200--Sobic006G155100 Sobic007G097400 Sobic007G097400 Sobic004G171200--Sobic007G097400 Sobic004G291400--Sobic005G105500 Sobic006G216000 Sobic006G216000 Sobic004G291400--Sobic006G216000 Sobic006G002201 Sobic006G002201 Sobic004G291400--Sobic006G002201 Sobic004G291400--Sobic006G020900 Sobic003G196800 Sobic003G196800 Sobic004G291400--Sobic003G196800 Sobic004G124100 Sobic004G124100 Sobic004G291400--Sobic004G124100 Sobic004G291400--Sobic002G341800 Sobic005G111900 Sobic005G111900 Sobic004G291400--Sobic005G111900 Sobic009G234400 Sobic009G234400 Sobic004G291400--Sobic009G234400 Sobic001G248100 Sobic001G248100 Sobic002G412700--Sobic001G248100 Sobic003G405500 Sobic003G405500 Sobic002G412700--Sobic003G405500 Sobic003G314700 Sobic003G314700 Sobic002G412700--Sobic003G314700 Sobic004G034700 Sobic004G034700 Sobic002G412700--Sobic004G034700 Sobic003G209400 Sobic003G209400 Sobic002G412700--Sobic003G209400 Sobic007G047600 Sobic007G047600 Sobic002G412700--Sobic007G047600 Sobic010G085200 Sobic010G085200 Sobic002G412700--Sobic010G085200 Sobic002G119600 Sobic002G119600 Sobic002G412700--Sobic002G119600 Sobic010G139500 Sobic010G139500 Sobic002G412700--Sobic010G139500
Octagon: transcription factors


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