Gene annotation
Transcriptome id Sobic.003G327100.1
Synonym RHC1A
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6Q6L7
Pfam PF14369 PF13639
Panther DB PTHR22763 PTHR22763:SF24
NCBI CDD -
KEGG Orthology K11982; E3 ubiquitin-protein ligase RNF115/126
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G40830 : RING-H2 finger C1A
RAP-DB (Rice) LOC_Os01g58780.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027180 , Zm00025a039833
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G327100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G262900 expressed protein -
2 Sobic.001G138300 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
3 Sobic.009G101400 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.003G048500 acyl-protein thioesterase, putative, expressed K06130: lysophospholipase II
5 Sobic.001G530500 per1-like family protein, putative, expressed -
6 Sobic.010G092300 N-rich protein, putative, expressed -
7 Sobic.006G198500 SNARE associated Golgi protein, putative, expressed -
8 Sobic.001G208300 Ser/Thr protein phosphatase family protein, putative, expressed -
9 Sobic.001G294200 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
10 Sobic.010G184100 mitochondrial carrier protein, putative, expressed -
11 Sobic.001G479200 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
12 Sobic.006G212100 expressed protein -
13 Sobic.001G106700 expressed protein -
14 Sobic.001G048100 OsAPRL5 adenosine 5\'-phosphosulfate reductase-like OsAPRL5, expressed -
15 Sobic.002G390300 heat shock protein DnaJ, putative, expressed -
16 Sobic.007G159500 uncharacterized protein, YigZ family, putative, expressed -
17 Sobic.004G083300 OsFBL7 - F-box domain and LRR containing protein, expressed K14515: EIN3-binding F-box protein
18 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
19 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
20 Sobic.002G288200 expressed protein -


Gene co-expression network
sample Sobic003G327100 Sobic003G327100 Sobic006G262900 Sobic006G262900 Sobic003G327100--Sobic006G262900 Sobic001G138300 Sobic001G138300 Sobic003G327100--Sobic001G138300 Sobic009G101400 Sobic009G101400 Sobic003G327100--Sobic009G101400 Sobic003G048500 Sobic003G048500 Sobic003G327100--Sobic003G048500 Sobic001G530500 Sobic001G530500 Sobic003G327100--Sobic001G530500 Sobic010G092300 Sobic010G092300 Sobic003G327100--Sobic010G092300 Sobic006G198500 Sobic006G198500 Sobic003G327100--Sobic006G198500 Sobic001G208300 Sobic001G208300 Sobic003G327100--Sobic001G208300 Sobic001G294200 Sobic001G294200 Sobic003G327100--Sobic001G294200 Sobic009G198500 Sobic009G198500 Sobic006G262900--Sobic009G198500 Sobic003G124800 Sobic003G124800 Sobic006G262900--Sobic003G124800 Sobic006G263900 Sobic006G263900 Sobic006G262900--Sobic006G263900 Sobic001G136900 Sobic001G136900 Sobic006G262900--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic006G262900--Sobic001G054200 Sobic010G083700 Sobic010G083700 Sobic006G262900--Sobic010G083700 Sobic001G129300 Sobic001G129300 Sobic006G262900--Sobic001G129300 Sobic007G203700 Sobic007G203700 Sobic006G262900--Sobic007G203700 Sobic007G079700 Sobic007G079700 Sobic006G262900--Sobic007G079700 Sobic004G079100 Sobic004G079100 Sobic001G138300--Sobic004G079100 Sobic003G350600 Sobic003G350600 Sobic001G138300--Sobic003G350600 Sobic001G430800 Sobic001G430800 Sobic001G138300--Sobic001G430800 Sobic004G231400 Sobic004G231400 Sobic001G138300--Sobic004G231400 Sobic001G138300--Sobic001G054200 Sobic006G212100 Sobic006G212100 Sobic001G138300--Sobic006G212100 Sobic001G441600 Sobic001G441600 Sobic001G138300--Sobic001G441600 Sobic001G138300--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G138300--Sobic002G129000 Sobic003G291500 Sobic003G291500 Sobic009G101400--Sobic003G291500 Sobic009G101400--Sobic001G294200 Sobic001G365800 Sobic001G365800 Sobic009G101400--Sobic001G365800 Sobic009G101400--Sobic003G327100 Sobic003G081700 Sobic003G081700 Sobic009G101400--Sobic003G081700 Sobic009G129900 Sobic009G129900 Sobic009G101400--Sobic009G129900 Sobic009G101400--Sobic001G530500 Sobic006G269000 Sobic006G269000 Sobic009G101400--Sobic006G269000 Sobic001G106700 Sobic001G106700 Sobic009G101400--Sobic001G106700 Sobic001G048100 Sobic001G048100 Sobic003G048500--Sobic001G048100 Sobic001G031100 Sobic001G031100 Sobic003G048500--Sobic001G031100 Sobic003G048500--Sobic001G530500 Sobic002G288200 Sobic002G288200 Sobic003G048500--Sobic002G288200 Sobic003G264200 Sobic003G264200 Sobic003G048500--Sobic003G264200 Sobic009G229200 Sobic009G229200 Sobic003G048500--Sobic009G229200 Sobic003G010400 Sobic003G010400 Sobic003G048500--Sobic003G010400 Sobic003G048500--Sobic003G327100 Sobic003G048500--Sobic010G092300 Sobic001G530500--Sobic001G365800 Sobic001G530500--Sobic003G048500 Sobic009G162600 Sobic009G162600 Sobic001G530500--Sobic009G162600 Sobic003G340600 Sobic003G340600 Sobic001G530500--Sobic003G340600 Sobic004G121100 Sobic004G121100 Sobic001G530500--Sobic004G121100 Sobic001G530500--Sobic010G092300 Sobic001G530500--Sobic003G081700 Sobic001G530500--Sobic001G048100 Sobic001G530500--Sobic003G327100 Sobic010G092300--Sobic003G340600 Sobic005G160400 Sobic005G160400 Sobic010G092300--Sobic005G160400 Sobic010G265300 Sobic010G265300 Sobic010G092300--Sobic010G265300 Sobic010G092300--Sobic003G264200 Sobic002G167500 Sobic002G167500 Sobic010G092300--Sobic002G167500 Sobic001G019800 Sobic001G019800 Sobic010G092300--Sobic001G019800 Sobic010G092300--Sobic009G162600 Sobic007G078500 Sobic007G078500 Sobic010G092300--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic010G092300--Sobic001G080700 Sobic006G198500--Sobic003G327100 Sobic009G203100 Sobic009G203100 Sobic006G198500--Sobic009G203100 Sobic001G459200 Sobic001G459200 Sobic006G198500--Sobic001G459200 Sobic009G185800 Sobic009G185800 Sobic006G198500--Sobic009G185800 Sobic003G429700 Sobic003G429700 Sobic006G198500--Sobic003G429700 Sobic002G194100 Sobic002G194100 Sobic006G198500--Sobic002G194100 Sobic002G291200 Sobic002G291200 Sobic006G198500--Sobic002G291200 Sobic002G390300 Sobic002G390300 Sobic006G198500--Sobic002G390300 Sobic001G447900 Sobic001G447900 Sobic006G198500--Sobic001G447900 Sobic001G543300 Sobic001G543300 Sobic001G208300--Sobic001G543300 Sobic001G208300--Sobic006G262900 Sobic003G078800 Sobic003G078800 Sobic001G208300--Sobic003G078800 Sobic001G208300--Sobic001G129300 Sobic001G208300--Sobic001G294200 Sobic009G129500 Sobic009G129500 Sobic001G208300--Sobic009G129500 Sobic001G208300--Sobic001G138300 Sobic001G208300--Sobic003G327100 Sobic001G372000 Sobic001G372000 Sobic001G208300--Sobic001G372000 Sobic001G294200--Sobic003G078800 Sobic001G294200--Sobic001G543300 Sobic001G294200--Sobic006G262900 Sobic001G512600 Sobic001G512600 Sobic001G294200--Sobic001G512600 Sobic009G133400 Sobic009G133400 Sobic001G294200--Sobic009G133400 Sobic001G294200--Sobic002G129000 Sobic001G294200--Sobic001G365800 Sobic004G301900 Sobic004G301900 Sobic001G294200--Sobic004G301900 Sobic001G078800 Sobic001G078800 Sobic001G294200--Sobic001G078800
Octagon: transcription factors


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