Gene annotation
Transcriptome id Sobic.001G100100.1
Synonym Sb01g008950, ZML2, GATA28, JAZ, TIFY2A
Functional annotation tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704)
GATA transcription factor 25, putative, expressed
UniProt C5WLV3
Pfam PF06200 PF00320 PF06203
Panther DB PTHR10071 PTHR10071:SF171
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G51600 : ZIM-LIKE 2
RAP-DB (Rice) LOC_Os03g52450.1 : GATA transcription factor 25, putative, expressed
MaizeGDB (Corn) Zm00025a016866
Brachypodium -
Barley HORVU4Hr1G010840.30 , HORVU4Hr1G010840.24 , HORVU4Hr1G010840.25 , HORVU4Hr1G010840.29 , HORVU4Hr1G010840.10 , HORVU4Hr1G010840.16 , HORVU4Hr1G010840.19 , HORVU4Hr1G010840.18 , HORVU4Hr1G010840.11 , HORVU4Hr1G010840.17 , HORVU4Hr1G010840.15 , HORVU4Hr1G010840.9 , HORVU4Hr1G010840.2 , HORVU4Hr1G010840.1
Wheat TraesCS4A02G249400 , TraesCS4D02G064200 , TraesCS4D02G064200 , TraesCS4B02G065300
Populus -


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cDNA sequences
Sobic.001G100100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G028500 pyridoxal biosynthesis protein PDX2, putative, expressed K08681: pdxT, 5'-phosphate synthase pdxT subunit
2 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
3 Sobic.002G104100 FYVE zinc finger domain containing protein, expressed -
4 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
5 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
6 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
7 Sobic.003G370700 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS1-18 - C2H2 zinc finger protein, expressed -
8 Sobic.001G468700 expressed protein -
9 Sobic.006G133900 NIN, putative, expressed -
10 Sobic.007G136200 expressed protein -
11 Sobic.001G046200 - -
12 Sobic.010G002700 expressed protein -
13 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
14 Sobic.003G220100 - -
15 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.004G181600 calmodulin binding protein, putative, expressed -
17 Sobic.001G418700 SLT1 protein, putative, expressed -
18 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
19 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
20 Sobic.004G164400 expressed protein -


Gene co-expression network
sample Sobic001G100100 Sobic001G100100 Sobic004G028500 Sobic004G028500 Sobic001G100100--Sobic004G028500 Sobic001G169900 Sobic001G169900 Sobic001G100100--Sobic001G169900 Sobic002G104100 Sobic002G104100 Sobic001G100100--Sobic002G104100 Sobic003G313300 Sobic003G313300 Sobic001G100100--Sobic003G313300 Sobic004G042200 Sobic004G042200 Sobic001G100100--Sobic004G042200 Sobic003G229300 Sobic003G229300 Sobic001G100100--Sobic003G229300 Sobic003G370700 Sobic003G370700 Sobic001G100100--Sobic003G370700 Sobic001G468700 Sobic001G468700 Sobic001G100100--Sobic001G468700 Sobic006G133900 Sobic006G133900 Sobic001G100100--Sobic006G133900 Sobic004G028500--Sobic001G468700 Sobic004G028500--Sobic003G313300 Sobic004G028500--Sobic001G100100 Sobic003G017100 Sobic003G017100 Sobic004G028500--Sobic003G017100 Sobic010G002700 Sobic010G002700 Sobic004G028500--Sobic010G002700 Sobic005G045000 Sobic005G045000 Sobic004G028500--Sobic005G045000 Sobic002G006600 Sobic002G006600 Sobic004G028500--Sobic002G006600 Sobic003G004200 Sobic003G004200 Sobic004G028500--Sobic003G004200 Sobic001G198100 Sobic001G198100 Sobic004G028500--Sobic001G198100 Sobic001G169900--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic001G169900--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic001G169900--Sobic010G043800 Sobic007G136200 Sobic007G136200 Sobic001G169900--Sobic007G136200 Sobic001G169900--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G017300 Sobic001G017300 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic004G181600 Sobic004G181600 Sobic002G104100--Sobic004G181600 Sobic002G104100--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic002G104100--Sobic006G065600 Sobic004G164400 Sobic004G164400 Sobic002G104100--Sobic004G164400 Sobic002G104100--Sobic003G370700 Sobic002G104100--Sobic001G169900 Sobic010G248700 Sobic010G248700 Sobic002G104100--Sobic010G248700 Sobic001G365900 Sobic001G365900 Sobic002G104100--Sobic001G365900 Sobic006G182900 Sobic006G182900 Sobic002G104100--Sobic006G182900 Sobic003G313300--Sobic003G017100 Sobic003G191700 Sobic003G191700 Sobic003G313300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G313300--Sobic010G176200 Sobic007G047400 Sobic007G047400 Sobic003G313300--Sobic007G047400 Sobic003G313300--Sobic004G028500 Sobic003G313300--Sobic001G017300 Sobic003G313300--Sobic001G468700 Sobic003G313300--Sobic010G002700 Sobic005G206300 Sobic005G206300 Sobic003G313300--Sobic005G206300 Sobic009G038900 Sobic009G038900 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic003G155100 Sobic003G155100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic004G042200--Sobic006G133900 Sobic003G229300--Sobic003G191700 Sobic003G229300--Sobic010G176200 Sobic003G229300--Sobic006G133900 Sobic003G229300--Sobic004G042200 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G222900 Sobic003G222900 Sobic003G229300--Sobic003G222900 Sobic003G370700--Sobic006G133900 Sobic001G333800 Sobic001G333800 Sobic003G370700--Sobic001G333800 Sobic003G370700--Sobic002G104100 Sobic003G370700--Sobic004G181600 Sobic003G370700--Sobic003G229300 Sobic003G370700--Sobic003G191700 Sobic003G370700--Sobic009G038900 Sobic003G370700--Sobic005G106600 Sobic003G370700--Sobic007G198300 Sobic001G468700--Sobic010G002700 Sobic001G468700--Sobic003G017100 Sobic001G468700--Sobic004G028500 Sobic001G468700--Sobic001G017300 Sobic009G121000 Sobic009G121000 Sobic001G468700--Sobic009G121000 Sobic003G247400 Sobic003G247400 Sobic001G468700--Sobic003G247400 Sobic001G468700--Sobic003G313300 Sobic003G276300 Sobic003G276300 Sobic001G468700--Sobic003G276300 Sobic001G468700--Sobic003G004200 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G133900--Sobic006G219600 Sobic006G133900--Sobic003G370700 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G133900--Sobic006G065600 Sobic006G133900--Sobic003G191700
Octagon: transcription factors


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