Gene annotation
Transcriptome id Sobic.002G129400.2,Sobic.002G129400.1,Sobic.002G129400.4,Sobic.002G129400.3
Synonym ATNAP8, NAP8, Sb02g011160
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1W0W3K7 , A0A1B6QAX4 , A0A1B6QAX7 , A0A1W0W3R7
Pfam PF00005 PF00664 PF00664 PF00005
Panther DB PTHR24221 PTHR24221:SF169
NCBI CDD KOG0057; Mitochondrial Fe/S cluster exporter, ABC superfamily KOG0058Peptide exporter, ABC superfamily
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0016021integral component of membrane GO:0006810transport GO:0005524ATP binding GO:0016887ATPase activity


Orthologs (automatic annotation)
TAIR AT4G25450 : non-intrinsic ABC protein 8
RAP-DB (Rice) LOC_Os07g28090.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a045892
Brachypodium KQK16368 , KQK16367 , KQK16366
Barley HORVU7Hr1G090820.2 , HORVU7Hr1G090820.3 , HORVU7Hr1G090820.1 , HORVU7Hr1G090800.23 , HORVU7Hr1G090800.22 , HORVU7Hr1G090800.21 , HORVU7Hr1G090800.20 , HORVU7Hr1G090800.27 , HORVU7Hr1G090800.26 , HORVU7Hr1G090800.25 , HORVU7Hr1G090800.24 , HORVU7Hr1G090800.28 , HORVU7Hr1G090800.1 , HORVU7Hr1G090800.2 , HORVU7Hr1G090800.3 , HORVU7Hr1G090800.4 , HORVU7Hr1G090800.5 , HORVU7Hr1G090800.6 , HORVU7Hr1G090800.7 , HORVU7Hr1G090800.8 , HORVU7Hr1G090800.9 , HORVU7Hr1G090800.18 , HORVU7Hr1G090800.19 , HORVU7Hr1G090800.12 , HORVU7Hr1G090800.13 , HORVU7Hr1G090800.10 , HORVU7Hr1G090800.11 , HORVU7Hr1G090800.16 , HORVU7Hr1G090800.17 , HORVU7Hr1G090800.14 , HORVU7Hr1G090800.15
Wheat TraesCS7B02G282800 , TraesCS7A02G380900 , TraesCS7A02G380900 , TraesCS7D02G377200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G166200 PPDK(PubMedID : 19549309)@NADP-malete dehydrogenase(PubMedID : 26904072)@NADP-malate dehydrogenase (NADP-MDH)(PubMedID : 16243851)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
2 Sobic.008G081900 ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
3 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
4 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
5 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
6 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
7 Sobic.003G203300 stress regulated protein, putative, expressed -
8 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
9 Sobic.001G219700 pentatricopeptide, putative, expressed -
10 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
11 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
12 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
13 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
14 Sobic.004G307100 M16 domain containing zinc peptidase, putative, expressed K06972: PITRM1, PreP, presequence protease
15 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
16 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
17 Sobic.001G333800 MYB family transcription factor, putative, expressed -
18 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
19 Sobic.007G169300 expressed protein -
20 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -


Gene co-expression network
sample Sobic002G129400 Sobic002G129400 Sobic007G166200 Sobic007G166200 Sobic002G129400--Sobic007G166200 Sobic008G081900 Sobic008G081900 Sobic002G129400--Sobic008G081900 Sobic002G072400 Sobic002G072400 Sobic002G129400--Sobic002G072400 Sobic002G349100 Sobic002G349100 Sobic002G129400--Sobic002G349100 Sobic002G081400 Sobic002G081400 Sobic002G129400--Sobic002G081400 Sobic009G093100 Sobic009G093100 Sobic002G129400--Sobic009G093100 Sobic003G203300 Sobic003G203300 Sobic002G129400--Sobic003G203300 Sobic006G065100 Sobic006G065100 Sobic002G129400--Sobic006G065100 Sobic001G219700 Sobic001G219700 Sobic002G129400--Sobic001G219700 Sobic007G166200--Sobic002G129400 Sobic007G166200--Sobic009G093100 Sobic007G166200--Sobic002G072400 Sobic004G207400 Sobic004G207400 Sobic007G166200--Sobic004G207400 Sobic009G170200 Sobic009G170200 Sobic007G166200--Sobic009G170200 Sobic007G166200--Sobic002G081400 Sobic007G166200--Sobic003G203300 Sobic007G166200--Sobic006G065100 Sobic004G019800 Sobic004G019800 Sobic007G166200--Sobic004G019800 Sobic008G081900--Sobic002G129400 Sobic008G081900--Sobic001G219700 Sobic004G307100 Sobic004G307100 Sobic008G081900--Sobic004G307100 Sobic010G035500 Sobic010G035500 Sobic008G081900--Sobic010G035500 Sobic008G081900--Sobic007G166200 Sobic007G169300 Sobic007G169300 Sobic008G081900--Sobic007G169300 Sobic004G300000 Sobic004G300000 Sobic008G081900--Sobic004G300000 Sobic004G026500 Sobic004G026500 Sobic008G081900--Sobic004G026500 Sobic006G030400 Sobic006G030400 Sobic008G081900--Sobic006G030400 Sobic002G072400--Sobic004G207400 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic004G238200 Sobic004G238200 Sobic002G072400--Sobic004G238200 Sobic002G072400--Sobic002G129400 Sobic002G072400--Sobic004G307100 Sobic004G281900 Sobic004G281900 Sobic002G072400--Sobic004G281900 Sobic002G072400--Sobic007G166200 Sobic002G072400--Sobic002G081400 Sobic002G349100--Sobic002G072400 Sobic002G349100--Sobic002G129400 Sobic002G349100--Sobic004G317700 Sobic002G349100--Sobic008G081900 Sobic002G349100--Sobic004G207400 Sobic002G349100--Sobic001G219700 Sobic002G349100--Sobic004G238200 Sobic009G162600 Sobic009G162600 Sobic002G349100--Sobic009G162600 Sobic004G300100 Sobic004G300100 Sobic002G349100--Sobic004G300100 Sobic002G081400--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G081400--Sobic004G271600 Sobic009G073900 Sobic009G073900 Sobic002G081400--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic002G081400--Sobic001G077300 Sobic003G003450 Sobic003G003450 Sobic002G081400--Sobic003G003450 Sobic006G090100 Sobic006G090100 Sobic002G081400--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic002G081400--Sobic001G509200 Sobic007G124500 Sobic007G124500 Sobic002G081400--Sobic007G124500 Sobic002G081400--Sobic009G170200 Sobic009G093100--Sobic001G077300 Sobic001G359300 Sobic001G359300 Sobic009G093100--Sobic001G359300 Sobic009G093100--Sobic004G019800 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G093100--Sobic009G073900 Sobic001G378100 Sobic001G378100 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic001G333800 Sobic001G333800 Sobic009G093100--Sobic001G333800 Sobic006G232600 Sobic006G232600 Sobic003G203300--Sobic006G232600 Sobic008G074000 Sobic008G074000 Sobic003G203300--Sobic008G074000 Sobic003G203300--Sobic001G378100 Sobic003G203300--Sobic009G093100 Sobic003G203300--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic003G203300--Sobic001G504400 Sobic003G203300--Sobic002G081400 Sobic006G233700 Sobic006G233700 Sobic003G203300--Sobic006G233700 Sobic003G203300--Sobic004G207400 Sobic006G065100--Sobic009G093100 Sobic006G065100--Sobic001G077300 Sobic004G127800 Sobic004G127800 Sobic006G065100--Sobic004G127800 Sobic003G073800 Sobic003G073800 Sobic006G065100--Sobic003G073800 Sobic006G065100--Sobic001G378100 Sobic006G065100--Sobic006G090100 Sobic006G065100--Sobic002G081400 Sobic005G179300 Sobic005G179300 Sobic006G065100--Sobic005G179300 Sobic006G065100--Sobic001G333800 Sobic001G219700--Sobic006G233700 Sobic001G219700--Sobic004G026500 Sobic001G124100 Sobic001G124100 Sobic001G219700--Sobic001G124100 Sobic001G219700--Sobic003G203300 Sobic001G219700--Sobic008G081900 Sobic001G219700--Sobic002G129400 Sobic005G084500 Sobic005G084500 Sobic001G219700--Sobic005G084500 Sobic009G241200 Sobic009G241200 Sobic001G219700--Sobic009G241200 Sobic001G219700--Sobic002G349100
Octagon: transcription factors


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