Gene annotation
Transcriptome id Sobic.007G166200.1,Sobic.007G166200.3
Synonym Sb07g023910,NADP-MDH;NMDH-II
Functional annotation PPDK (PubMedID : 19549309)
NADP-malete dehydrogenase (PubMedID : 26904072)
NADP-malate dehydrogenase (NADP-MDH) (PubMedID : 16243851)
lactate/malate dehydrogenase, putative, expressed
UniProt P37229 , Q43830 , A0A1B6PI58 , A0A1B6PI60
Pfam PF00056 PF02866
Panther DB PTHR23382 PTHR23382:SF0
NCBI CDD KOG1496; Malate dehydrogenase
KEGG Orthology K00051; malate dehydrogenase (NADP+)
Gene Ontology GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0016615malate dehydrogenase activity GO:0006108malate metabolic process


Orthologs (automatic annotation)
TAIR AT5G58330 : lactate/malate dehydrogenase family protein
RAP-DB (Rice) LOC_Os08g44810.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a005567
Brachypodium KQJ94667 , KQJ94669 , KQJ94668
Barley HORVU7Hr1G060260.13 , HORVU7Hr1G060260.12 , HORVU7Hr1G060260.11 , HORVU7Hr1G060260.10 , HORVU7Hr1G060260.9 , HORVU7Hr1G060260.8 , HORVU7Hr1G060260.7 , HORVU7Hr1G060260.6 , HORVU7Hr1G060260.5 , HORVU7Hr1G060260.4 , HORVU7Hr1G060260.3 , HORVU7Hr1G060260.2 , HORVU4Hr1G090080.1
Wheat TraesCS7B02G197000 , TraesCS7B02G197000 , TraesCS7D02G283900 , TraesCSU02G135100 , TraesCSU02G135100 , TraesCSU02G135100 , TraesCSU02G135100 , TraesCSU02G127700 , TraesCSU02G127700 , TraesCS5A02G549900 , TraesCS7D02G283900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G129400 ABC transporter, ATP-binding protein, putative, expressed -
2 Sobic.009G093100 OsAGSW1(Ortholog in rice:Li and Li 2015)(PubMedID : 31659923)@ ELMO/CED-12 family protein, putative, expressed -
3 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
4 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
5 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
6 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
7 Sobic.003G203300 stress regulated protein, putative, expressed -
8 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
9 Sobic.004G019800 MATE domain containing protein, expressed -
10 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
11 Sobic.009G219100 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"serine/threonine-protein kinase SNT7, chloroplast precursor"("PubMedID : 26759170,PubMedID : 24597475")@serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed -
12 Sobic.008G081900 ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
13 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
14 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
15 Sobic.001G536700 expressed protein -
16 Sobic.004G238200 arsenical pump-driving ATPase, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
17 Sobic.003G287900 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
18 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
19 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
20 Sobic.003G166200 expressed protein -


Gene co-expression network
sample Sobic007G166200 Sobic007G166200 Sobic002G129400 Sobic002G129400 Sobic007G166200--Sobic002G129400 Sobic009G093100 Sobic009G093100 Sobic007G166200--Sobic009G093100 Sobic002G072400 Sobic002G072400 Sobic007G166200--Sobic002G072400 Sobic004G207400 Sobic004G207400 Sobic007G166200--Sobic004G207400 Sobic009G170200 Sobic009G170200 Sobic007G166200--Sobic009G170200 Sobic002G081400 Sobic002G081400 Sobic007G166200--Sobic002G081400 Sobic003G203300 Sobic003G203300 Sobic007G166200--Sobic003G203300 Sobic006G065100 Sobic006G065100 Sobic007G166200--Sobic006G065100 Sobic004G019800 Sobic004G019800 Sobic007G166200--Sobic004G019800 Sobic002G129400--Sobic007G166200 Sobic008G081900 Sobic008G081900 Sobic002G129400--Sobic008G081900 Sobic002G129400--Sobic002G072400 Sobic002G349100 Sobic002G349100 Sobic002G129400--Sobic002G349100 Sobic002G129400--Sobic002G081400 Sobic002G129400--Sobic009G093100 Sobic002G129400--Sobic003G203300 Sobic002G129400--Sobic006G065100 Sobic001G219700 Sobic001G219700 Sobic002G129400--Sobic001G219700 Sobic001G077300 Sobic001G077300 Sobic009G093100--Sobic001G077300 Sobic001G359300 Sobic001G359300 Sobic009G093100--Sobic001G359300 Sobic009G093100--Sobic004G019800 Sobic009G093100--Sobic006G065100 Sobic001G536700 Sobic001G536700 Sobic009G093100--Sobic001G536700 Sobic009G073900 Sobic009G073900 Sobic009G093100--Sobic009G073900 Sobic001G378100 Sobic001G378100 Sobic009G093100--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic009G093100--Sobic002G206300 Sobic001G333800 Sobic001G333800 Sobic009G093100--Sobic001G333800 Sobic002G072400--Sobic004G207400 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic004G238200 Sobic004G238200 Sobic002G072400--Sobic004G238200 Sobic002G072400--Sobic002G129400 Sobic004G307100 Sobic004G307100 Sobic002G072400--Sobic004G307100 Sobic004G281900 Sobic004G281900 Sobic002G072400--Sobic004G281900 Sobic002G072400--Sobic007G166200 Sobic002G072400--Sobic002G081400 Sobic004G207400--Sobic002G072400 Sobic006G232600 Sobic006G232600 Sobic004G207400--Sobic006G232600 Sobic004G207400--Sobic004G238200 Sobic004G207400--Sobic009G170200 Sobic004G207400--Sobic003G203300 Sobic002G225100 Sobic002G225100 Sobic004G207400--Sobic002G225100 Sobic004G300100 Sobic004G300100 Sobic004G207400--Sobic004G300100 Sobic004G207400--Sobic004G281900 Sobic004G207400--Sobic007G166200 Sobic003G070900 Sobic003G070900 Sobic009G170200--Sobic003G070900 Sobic009G170200--Sobic006G232600 Sobic007G087100 Sobic007G087100 Sobic009G170200--Sobic007G087100 Sobic004G103300 Sobic004G103300 Sobic009G170200--Sobic004G103300 Sobic002G133900 Sobic002G133900 Sobic009G170200--Sobic002G133900 Sobic009G170200--Sobic001G077300 Sobic004G353100 Sobic004G353100 Sobic009G170200--Sobic004G353100 Sobic009G170200--Sobic001G378100 Sobic007G103400 Sobic007G103400 Sobic009G170200--Sobic007G103400 Sobic002G081400--Sobic004G317700 Sobic004G271600 Sobic004G271600 Sobic002G081400--Sobic004G271600 Sobic002G081400--Sobic009G073900 Sobic002G081400--Sobic001G077300 Sobic003G003450 Sobic003G003450 Sobic002G081400--Sobic003G003450 Sobic006G090100 Sobic006G090100 Sobic002G081400--Sobic006G090100 Sobic001G509200 Sobic001G509200 Sobic002G081400--Sobic001G509200 Sobic007G124500 Sobic007G124500 Sobic002G081400--Sobic007G124500 Sobic002G081400--Sobic009G170200 Sobic003G203300--Sobic006G232600 Sobic008G074000 Sobic008G074000 Sobic003G203300--Sobic008G074000 Sobic003G203300--Sobic001G378100 Sobic003G203300--Sobic009G093100 Sobic003G203300--Sobic009G170200 Sobic001G504400 Sobic001G504400 Sobic003G203300--Sobic001G504400 Sobic003G203300--Sobic002G081400 Sobic006G233700 Sobic006G233700 Sobic003G203300--Sobic006G233700 Sobic003G203300--Sobic004G207400 Sobic006G065100--Sobic009G093100 Sobic006G065100--Sobic001G077300 Sobic004G127800 Sobic004G127800 Sobic006G065100--Sobic004G127800 Sobic003G073800 Sobic003G073800 Sobic006G065100--Sobic003G073800 Sobic006G065100--Sobic001G378100 Sobic006G065100--Sobic006G090100 Sobic006G065100--Sobic002G081400 Sobic005G179300 Sobic005G179300 Sobic006G065100--Sobic005G179300 Sobic006G065100--Sobic001G333800 Sobic004G019800--Sobic009G093100 Sobic004G019800--Sobic001G378100 Sobic004G019800--Sobic001G536700 Sobic004G019800--Sobic009G170200 Sobic004G019800--Sobic001G504400 Sobic009G237000 Sobic009G237000 Sobic004G019800--Sobic009G237000 Sobic004G019800--Sobic001G359300 Sobic002G258600 Sobic002G258600 Sobic004G019800--Sobic002G258600 Sobic003G233700 Sobic003G233700 Sobic004G019800--Sobic003G233700
Octagon: transcription factors


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