Gene annotation
Transcriptome id Sobic.003G403700.2,Sobic.003G403700.1
Synonym Sb03g043940, UBQ10
Functional annotation ubiquitin family protein, putative, expressed
UniProt A0A194YM16
Pfam PF11976
Panther DB PTHR10666
NCBI CDD KOG0005; Ubiquitin-like protein KOG0001Ubiquitin and ubiquitin-like proteins
KEGG Orthology K08770; ubiquitin C K04551ubiquitin B
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05320 : polyubiquitin 10
RAP-DB (Rice) LOC_Os06g46770.1,LOC_Os06g46770.2 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036147 , Zm00025a042947 , Zm00025a042035 , Zm00025a005173 , Zm00025a001454 , Zm00025a050018 , Zm00025a001458 , Zm00025a037444 , Zm00025a013490
Brachypodium KQJ91591 , KQJ95133 , KQJ93465 , KQK17173 , KQK17147 , PNT77709 , PNT77708 , KQK17095 , KQK07353 , KQK16840 , KQJ93464 , KQJ93343 , KQK00865 , KQK00864 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G103170.19 , HORVU7Hr1G103170.18 , HORVU7Hr1G103170.17 , HORVU7Hr1G103170.16 , HORVU7Hr1G103170.15 , HORVU7Hr1G103170.14 , HORVU7Hr1G103170.13 , HORVU7Hr1G103170.12 , HORVU7Hr1G103170.11 , HORVU7Hr1G103170.10 , HORVU7Hr1G102840.10 , HORVU7Hr1G102840.11 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU7Hr1G113500.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU5Hr1G019590.13 , HORVU5Hr1G019590.12 , HORVU5Hr1G019590.11 , HORVU5Hr1G019590.10 , HORVU5Hr1G019590.15 , HORVU5Hr1G019590.14 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU6Hr1G026260.9 , HORVU6Hr1G026260.1 , HORVU7Hr1G113500.2 , HORVU5Hr1G019600.8 , HORVU5Hr1G019600.3 , HORVU5Hr1G019600.2 , HORVU5Hr1G019600.1 , HORVU5Hr1G019600.7 , HORVU5Hr1G019600.6 , HORVU5Hr1G019600.5 , HORVU5Hr1G019600.4 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU7Hr1G103550.1 , HORVU7Hr1G103550.3 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU6Hr1G026200.9 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.5 , HORVU7Hr1G102840.4 , HORVU7Hr1G102840.5 , HORVU7Hr1G102840.6 , HORVU7Hr1G102840.7 , HORVU6Hr1G026260.8 , HORVU7Hr1G102840.1 , HORVU7Hr1G102840.2 , HORVU7Hr1G102840.3 , HORVU6Hr1G026260.4 , HORVU6Hr1G026260.5 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU7Hr1G102840.8 , HORVU7Hr1G102840.9 , HORVU6Hr1G026260.2 , HORVU6Hr1G026260.3 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.11 , HORVU7Hr1G103330.10 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.12 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.18 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.17 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.9 , HORVU7Hr1G103330.8 , HORVU7Hr1G103330.5 , HORVU7Hr1G103330.4 , HORVU7Hr1G103330.7 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.1 , HORVU7Hr1G103330.3 , HORVU7Hr1G103330.2 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU4Hr1G040980.1 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.6 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.2 , HORVU6Hr1G021700.3 , HORVU5Hr1G019590.9 , HORVU5Hr1G019590.8 , HORVU5Hr1G019590.3 , HORVU5Hr1G019590.2 , HORVU5Hr1G019590.1 , HORVU5Hr1G019590.7 , HORVU5Hr1G019590.6 , HORVU5Hr1G019590.5 , HORVU5Hr1G019590.4 , HORVU0Hr1G025670.1 , HORVU0Hr1G025670.2 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.3 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU7Hr1G029150.1 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.4 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.1 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.20 , HORVU6Hr1G026200.22 , HORVU6Hr1G026200.16 , HORVU0Hr1G038500.1 , HORVU0Hr1G038500.2 , HORVU0Hr1G038500.3 , HORVU2Hr1G048820.1 , HORVU7Hr1G103170.22 , HORVU7Hr1G103170.20 , HORVU7Hr1G103170.21 , HORVU1Hr1G082070.1 , HORVU6Hr1G014910.1 , HORVU2Hr1G048830.1 , HORVU7Hr1G029150.2 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.10 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G014970.1 , HORVU6Hr1G014970.3 , HORVU6Hr1G014970.2 , HORVU6Hr1G014970.5 , HORVU6Hr1G014970.4 , HORVU6Hr1G014970.7 , HORVU6Hr1G014970.6 , HORVU6Hr1G014970.8
Wheat TraesCS6D02G109600 , TraesCS7D02G443100 , TraesCS7D02G474200 , TraesCS7A02G453300 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS7A02G466500 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS5D02G087500 , TraesCS6A02G087800 , TraesCS4B02G233100 , TraesCS4B02G233100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCSU02G018500 , TraesCS5B02G080200 , TraesCS7B02G354000 , TraesCS7B02G354000 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS6B02G176000 , TraesCS4B02G387300 , TraesCS2D02G458700 , TraesCS7B02G354200 , TraesCS7B02G354100 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS7A02G453600 , TraesCS6D02G136800 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS6A02G147500 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS7B02G366700 , TraesCS6B02G140600 , TraesCS6D02G248600 , TraesCS7A02G453500 , TraesCS5A02G073800 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS7A02G487500
Populus PNT59589 , PNT59588 , PNT04278 , PNT28507 , PNT28506 , PNT13284 , PNT13285 , PNT13286 , PNT13287 , PNT13281 , PNT13282 , PNT13283 , PNT13288 , PNT13289 , PNT13292 , PNT13291 , PNT13290 , PNT56763 , PNT59598 , PNT59599 , PNT59596 , PNT59597 , PNT59594 , PNT59595 , PNT59592 , PNT59593 , PNT59590 , PNT59591 , PNT59600


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cDNA sequences
Sobic.003G403700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.003G087000 expressed protein -
3 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
4 Sobic.004G005200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane protein 120A, putative, expressed -
5 Sobic.010G061800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
6 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -
7 Sobic.004G181900 expressed protein -
8 Sobic.001G406100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15100: SLC25A1, solute carrier family 25 (mitochondrial citrate transporter), member 1
9 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
10 Sobic.002G263600 expressed protein -
11 Sobic.003G139800 protein kinase, putative, expressed K13436: pto-interacting protein 1
12 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
13 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
14 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
15 Sobic.004G255700 sucrase-related, putative, expressed -
16 Sobic.003G257000 THAP domain-containing protein 4, putative, expressed -
17 Sobic.009G225000 transmembrane protein 93, putative, expressed -
18 Sobic.007G139700 DCN1, putative, expressed K17824: DCN1-like protein 4/5
19 Sobic.004G206700 vesicle transport protein GOT1B, putative, expressed -
20 Sobic.006G187100 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1


Gene co-expression network
sample Sobic003G403700 Sobic003G403700 Sobic001G070000 Sobic001G070000 Sobic003G403700--Sobic001G070000 Sobic003G087000 Sobic003G087000 Sobic003G403700--Sobic003G087000 Sobic010G131900 Sobic010G131900 Sobic003G403700--Sobic010G131900 Sobic004G005200 Sobic004G005200 Sobic003G403700--Sobic004G005200 Sobic010G061800 Sobic010G061800 Sobic003G403700--Sobic010G061800 Sobic001G203900 Sobic001G203900 Sobic003G403700--Sobic001G203900 Sobic004G181900 Sobic004G181900 Sobic003G403700--Sobic004G181900 Sobic001G406100 Sobic001G406100 Sobic003G403700--Sobic001G406100 Sobic001G219300 Sobic001G219300 Sobic003G403700--Sobic001G219300 Sobic001G070000--Sobic001G406100 Sobic010G116400 Sobic010G116400 Sobic001G070000--Sobic010G116400 Sobic008G047400 Sobic008G047400 Sobic001G070000--Sobic008G047400 Sobic006G090500 Sobic006G090500 Sobic001G070000--Sobic006G090500 Sobic003G243600 Sobic003G243600 Sobic001G070000--Sobic003G243600 Sobic008G059100 Sobic008G059100 Sobic001G070000--Sobic008G059100 Sobic001G070000--Sobic003G403700 Sobic001G185500 Sobic001G185500 Sobic001G070000--Sobic001G185500 Sobic001G476700 Sobic001G476700 Sobic001G070000--Sobic001G476700 Sobic010G064600 Sobic010G064600 Sobic003G087000--Sobic010G064600 Sobic010G261600 Sobic010G261600 Sobic003G087000--Sobic010G261600 Sobic006G114400 Sobic006G114400 Sobic003G087000--Sobic006G114400 Sobic008G093000 Sobic008G093000 Sobic003G087000--Sobic008G093000 Sobic007G075500 Sobic007G075500 Sobic003G087000--Sobic007G075500 Sobic009G225000 Sobic009G225000 Sobic003G087000--Sobic009G225000 Sobic004G228800 Sobic004G228800 Sobic003G087000--Sobic004G228800 Sobic003G312200 Sobic003G312200 Sobic003G087000--Sobic003G312200 Sobic009G139800 Sobic009G139800 Sobic003G087000--Sobic009G139800 Sobic009G084000 Sobic009G084000 Sobic010G131900--Sobic009G084000 Sobic002G311100 Sobic002G311100 Sobic010G131900--Sobic002G311100 Sobic010G074300 Sobic010G074300 Sobic010G131900--Sobic010G074300 Sobic002G263600 Sobic002G263600 Sobic010G131900--Sobic002G263600 Sobic010G147100 Sobic010G147100 Sobic010G131900--Sobic010G147100 Sobic003G365300 Sobic003G365300 Sobic010G131900--Sobic003G365300 Sobic009G068500 Sobic009G068500 Sobic010G131900--Sobic009G068500 Sobic003G264100 Sobic003G264100 Sobic010G131900--Sobic003G264100 Sobic010G131900--Sobic001G203900 Sobic001G313500 Sobic001G313500 Sobic004G005200--Sobic001G313500 Sobic010G210500 Sobic010G210500 Sobic004G005200--Sobic010G210500 Sobic004G005200--Sobic006G090500 Sobic004G005200--Sobic010G261600 Sobic003G228100 Sobic003G228100 Sobic004G005200--Sobic003G228100 Sobic002G303600 Sobic002G303600 Sobic004G005200--Sobic002G303600 Sobic004G005200--Sobic004G228800 Sobic001G003000 Sobic001G003000 Sobic004G005200--Sobic001G003000 Sobic001G350700 Sobic001G350700 Sobic004G005200--Sobic001G350700 Sobic010G061800--Sobic001G203900 Sobic001G214100 Sobic001G214100 Sobic010G061800--Sobic001G214100 Sobic010G061800--Sobic008G093000 Sobic010G061800--Sobic006G090500 Sobic004G261900 Sobic004G261900 Sobic010G061800--Sobic004G261900 Sobic010G061800--Sobic003G403700 Sobic002G262300 Sobic002G262300 Sobic010G061800--Sobic002G262300 Sobic006G247900 Sobic006G247900 Sobic010G061800--Sobic006G247900 Sobic008G179900 Sobic008G179900 Sobic010G061800--Sobic008G179900 Sobic001G203900--Sobic003G365300 Sobic001G203900--Sobic010G131900 Sobic002G226900 Sobic002G226900 Sobic001G203900--Sobic002G226900 Sobic001G199100 Sobic001G199100 Sobic001G203900--Sobic001G199100 Sobic001G203900--Sobic008G093000 Sobic003G012200 Sobic003G012200 Sobic001G203900--Sobic003G012200 Sobic003G006300 Sobic003G006300 Sobic001G203900--Sobic003G006300 Sobic004G275700 Sobic004G275700 Sobic001G203900--Sobic004G275700 Sobic001G203900--Sobic009G068500 Sobic001G206900 Sobic001G206900 Sobic004G181900--Sobic001G206900 Sobic003G349300 Sobic003G349300 Sobic004G181900--Sobic003G349300 Sobic001G283200 Sobic001G283200 Sobic004G181900--Sobic001G283200 Sobic010G205300 Sobic010G205300 Sobic004G181900--Sobic010G205300 Sobic006G281800 Sobic006G281800 Sobic004G181900--Sobic006G281800 Sobic004G181900--Sobic009G225000 Sobic004G348900 Sobic004G348900 Sobic004G181900--Sobic004G348900 Sobic009G149500 Sobic009G149500 Sobic004G181900--Sobic009G149500 Sobic001G085100 Sobic001G085100 Sobic004G181900--Sobic001G085100 Sobic001G406100--Sobic001G070000 Sobic001G406100--Sobic010G074300 Sobic001G406100--Sobic008G047400 Sobic002G358400 Sobic002G358400 Sobic001G406100--Sobic002G358400 Sobic004G103000 Sobic004G103000 Sobic001G406100--Sobic004G103000 Sobic008G187100 Sobic008G187100 Sobic001G406100--Sobic008G187100 Sobic004G070700 Sobic004G070700 Sobic001G406100--Sobic004G070700 Sobic002G204200 Sobic002G204200 Sobic001G406100--Sobic002G204200 Sobic009G207300 Sobic009G207300 Sobic001G406100--Sobic009G207300 Sobic002G111200 Sobic002G111200 Sobic001G219300--Sobic002G111200 Sobic004G080100 Sobic004G080100 Sobic001G219300--Sobic004G080100 Sobic003G055700 Sobic003G055700 Sobic001G219300--Sobic003G055700 Sobic010G049100 Sobic010G049100 Sobic001G219300--Sobic010G049100 Sobic009G257600 Sobic009G257600 Sobic001G219300--Sobic009G257600 Sobic001G014800 Sobic001G014800 Sobic001G219300--Sobic001G014800 Sobic009G005900 Sobic009G005900 Sobic001G219300--Sobic009G005900 Sobic006G244700 Sobic006G244700 Sobic001G219300--Sobic006G244700 Sobic008G032600 Sobic008G032600 Sobic001G219300--Sobic008G032600
Octagon: transcription factors


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