Gene annotation
Transcriptome id Sobic.002G346900.2,Sobic.002G346900.1
Synonym Sb02g036950
Functional annotation pre-mRNA-splicing factor, putative, expressed
UniProt C5XCA3
Pfam PF08799 PF02840
Panther DB PTHR13007 PTHR13007:SF19
NCBI CDD KOG2808; U5 snRNP-associated RNA splicing factor
KEGG Orthology K12817; PRPF18, pre-mRNA-splicing factor 18
Gene Ontology GO:0008380; RNA splicing GO:0005681spliceosomal complex


Orthologs (automatic annotation)
TAIR AT1G03140 : splicing factor Prp18 family protein
RAP-DB (Rice) LOC_Os07g38420.1 : pre-mRNA-splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a048458 , Zm00025a056532 , Zm00025a056533 , Zm00025a056530 , Zm00025a056531 , Zm00025a002553 , Zm00025a039739
Brachypodium KQK15625 , KQK13656
Barley HORVU4Hr1G006120.1 , HORVU2Hr1G038180.2 , HORVU2Hr1G038180.3 , HORVU2Hr1G038180.1
Wheat TraesCS2D02G205000 , TraesCS2A02G197100 , TraesCS2B02G224600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G346900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
2 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
3 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
4 Sobic.001G131800 expressed protein K15186: ELL-associated factor
5 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
6 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
7 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
8 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
9 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
10 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
11 Sobic.009G198100 expressed protein -
12 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.006G109300 protein binding protein, putative, expressed -
14 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
15 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
16 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
17 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
18 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
19 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
20 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1


Gene co-expression network
sample Sobic002G346900 Sobic002G346900 Sobic010G055500 Sobic010G055500 Sobic002G346900--Sobic010G055500 Sobic003G359300 Sobic003G359300 Sobic002G346900--Sobic003G359300 Sobic008G174300 Sobic008G174300 Sobic002G346900--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic002G346900--Sobic001G131800 Sobic010G071200 Sobic010G071200 Sobic002G346900--Sobic010G071200 Sobic004G263900 Sobic004G263900 Sobic002G346900--Sobic004G263900 Sobic001G512900 Sobic001G512900 Sobic002G346900--Sobic001G512900 Sobic010G033400 Sobic010G033400 Sobic002G346900--Sobic010G033400 Sobic010G260500 Sobic010G260500 Sobic002G346900--Sobic010G260500 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic001G149700 Sobic001G149700 Sobic010G055500--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G055500--Sobic004G231400 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic008G142700 Sobic008G142700 Sobic010G055500--Sobic008G142700 Sobic004G150400 Sobic004G150400 Sobic010G055500--Sobic004G150400 Sobic003G359300--Sobic010G033400 Sobic003G359300--Sobic004G263900 Sobic003G248500 Sobic003G248500 Sobic003G359300--Sobic003G248500 Sobic007G063200 Sobic007G063200 Sobic003G359300--Sobic007G063200 Sobic001G028400 Sobic001G028400 Sobic003G359300--Sobic001G028400 Sobic003G359300--Sobic008G174300 Sobic001G056200 Sobic001G056200 Sobic003G359300--Sobic001G056200 Sobic002G365100 Sobic002G365100 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300 Sobic008G174300--Sobic001G131800 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic008G174300--Sobic003G081000 Sobic007G118200 Sobic007G118200 Sobic008G174300--Sobic007G118200 Sobic008G174300--Sobic004G263900 Sobic009G198100 Sobic009G198100 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic008G174300--Sobic003G359300 Sobic001G131800--Sobic008G174300 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic001G131800--Sobic010G033400 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G107500 Sobic001G107500 Sobic001G131800--Sobic001G107500 Sobic007G111100 Sobic007G111100 Sobic001G131800--Sobic007G111100 Sobic001G131800--Sobic003G359300 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic010G071200--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic004G263900--Sobic010G055500 Sobic004G263900--Sobic010G071200 Sobic004G263900--Sobic001G056200 Sobic004G263900--Sobic003G359300 Sobic004G263900--Sobic008G174300 Sobic004G263900--Sobic007G063200 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic004G263900--Sobic002G084300 Sobic001G512900--Sobic010G071200 Sobic001G512900--Sobic010G055500 Sobic001G512900--Sobic008G142700 Sobic001G512900--Sobic008G174300 Sobic001G512900--Sobic001G083600 Sobic001G512900--Sobic001G390500 Sobic001G512900--Sobic001G149700 Sobic003G127400 Sobic003G127400 Sobic001G512900--Sobic003G127400 Sobic009G246950 Sobic009G246950 Sobic001G512900--Sobic009G246950 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic004G350100 Sobic004G350100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic010G033400--Sobic001G131800 Sobic002G157300 Sobic002G157300 Sobic010G260500--Sobic002G157300 Sobic010G260500--Sobic008G174300 Sobic007G078000 Sobic007G078000 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic010G260500--Sobic004G263900 Sobic005G149500 Sobic005G149500 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.