Gene annotation
Transcriptome id Sobic.003G316850.1
Synonym -
Functional annotation -
UniProt A0A1W0VZY5
Pfam PF04144
Panther DB PTHR10687 PTHR10687:SF19
NCBI CDD KOG3088; Secretory carrier membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT1G61250 : secretory carrier 3
RAP-DB (Rice) LOC_Os01g57220.1 : secretory carrier-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a027281 , Zm00025a044147 , Zm00025a037897
Brachypodium KQK05526 , KQK10072
Barley HORVU3Hr1G076750.1 , HORVU3Hr1G076750.2 , HORVU3Hr1G076750.3 , HORVU3Hr1G076750.4 , HORVU3Hr1G076750.5 , HORVU3Hr1G076750.6
Wheat TraesCS3A02G317400 , TraesCS3B02G349100 , TraesCS3D02G313900
Populus PNT39409


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
2 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
3 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
6 Sobic.009G256200 expressed protein -
7 Sobic.010G051500 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
8 Sobic.010G221400 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
9 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
10 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
11 Sobic.004G018800 HVA22, putative, expressed -
12 Sobic.006G183000 RING zinc finger protein, putative, expressed -
13 Sobic.006G225300 expressed protein -
14 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
15 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
16 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
17 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
18 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
19 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1


Gene co-expression network
sample Sobic003G316850 Sobic003G316850 Sobic004G316900 Sobic004G316900 Sobic003G316850--Sobic004G316900 Sobic001G501200 Sobic001G501200 Sobic003G316850--Sobic001G501200 Sobic004G339200 Sobic004G339200 Sobic003G316850--Sobic004G339200 Sobic010G193800 Sobic010G193800 Sobic003G316850--Sobic010G193800 Sobic002G204000 Sobic002G204000 Sobic003G316850--Sobic002G204000 Sobic009G256200 Sobic009G256200 Sobic003G316850--Sobic009G256200 Sobic010G051500 Sobic010G051500 Sobic003G316850--Sobic010G051500 Sobic010G221400 Sobic010G221400 Sobic003G316850--Sobic010G221400 Sobic003G043400 Sobic003G043400 Sobic003G316850--Sobic003G043400 Sobic001G136900 Sobic001G136900 Sobic004G316900--Sobic001G136900 Sobic004G316900--Sobic002G204000 Sobic002G256300 Sobic002G256300 Sobic004G316900--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic004G316900--Sobic001G529000 Sobic004G316900--Sobic003G316850 Sobic004G316900--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic004G316900--Sobic004G226800 Sobic007G203700 Sobic007G203700 Sobic004G316900--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic004G316900--Sobic001G439600 Sobic009G198500 Sobic009G198500 Sobic001G501200--Sobic009G198500 Sobic007G096700 Sobic007G096700 Sobic001G501200--Sobic007G096700 Sobic001G005900 Sobic001G005900 Sobic001G501200--Sobic001G005900 Sobic007G168600 Sobic007G168600 Sobic001G501200--Sobic007G168600 Sobic001G428100 Sobic001G428100 Sobic001G501200--Sobic001G428100 Sobic003G124800 Sobic003G124800 Sobic001G501200--Sobic003G124800 Sobic001G502200 Sobic001G502200 Sobic001G501200--Sobic001G502200 Sobic004G300900 Sobic004G300900 Sobic001G501200--Sobic004G300900 Sobic004G130100 Sobic004G130100 Sobic001G501200--Sobic004G130100 Sobic001G078500 Sobic001G078500 Sobic004G339200--Sobic001G078500 Sobic002G400000 Sobic002G400000 Sobic004G339200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic004G339200--Sobic010G168600 Sobic009G171700 Sobic009G171700 Sobic004G339200--Sobic009G171700 Sobic003G007500 Sobic003G007500 Sobic004G339200--Sobic003G007500 Sobic004G339200--Sobic009G198500 Sobic001G433400 Sobic001G433400 Sobic004G339200--Sobic001G433400 Sobic004G339200--Sobic001G439600 Sobic007G186300 Sobic007G186300 Sobic004G339200--Sobic007G186300 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic010G193800--Sobic007G203700 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic002G204000--Sobic010G193800 Sobic002G204000--Sobic004G226800 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic009G256200--Sobic010G221400 Sobic009G256200--Sobic009G171700 Sobic009G256200--Sobic010G193800 Sobic010G101200 Sobic010G101200 Sobic009G256200--Sobic010G101200 Sobic009G256200--Sobic003G316850 Sobic009G256200--Sobic002G256300 Sobic009G256200--Sobic009G246950 Sobic004G203100 Sobic004G203100 Sobic009G256200--Sobic004G203100 Sobic002G352700 Sobic002G352700 Sobic009G256200--Sobic002G352700 Sobic004G018800 Sobic004G018800 Sobic010G051500--Sobic004G018800 Sobic010G051500--Sobic001G532100 Sobic001G285300 Sobic001G285300 Sobic010G051500--Sobic001G285300 Sobic010G051500--Sobic007G203700 Sobic010G051500--Sobic003G316850 Sobic006G143500 Sobic006G143500 Sobic010G051500--Sobic006G143500 Sobic003G424800 Sobic003G424800 Sobic010G051500--Sobic003G424800 Sobic010G051500--Sobic004G019600 Sobic010G051500--Sobic010G193800 Sobic010G221400--Sobic009G256200 Sobic010G221400--Sobic010G193800 Sobic010G221400--Sobic002G256300 Sobic008G161800 Sobic008G161800 Sobic010G221400--Sobic008G161800 Sobic002G373800 Sobic002G373800 Sobic010G221400--Sobic002G373800 Sobic010G221400--Sobic003G316850 Sobic010G221400--Sobic009G246950 Sobic001G415500 Sobic001G415500 Sobic010G221400--Sobic001G415500 Sobic009G036900 Sobic009G036900 Sobic010G221400--Sobic009G036900 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400
Octagon: transcription factors


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