Gene annotation
Transcriptome id Sobic.009G252800.5,Sobic.009G252800.3,Sobic.009G252800.2,Sobic.009G252800.6,Sobic.009G252800.7,Sobic.009G252800.8,Sobic.009G252800.4
Synonym Sb09g030340
Functional annotation expressed protein
UniProt C5YWX8
Pfam PF03661
Panther DB PTHR30603 PTHR30603:SF21 PTHR30603:SF21 PTHR30603
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G02420 : -
RAP-DB (Rice) LOC_Os05g51140.2 : expressed protein
MaizeGDB (Corn) Zm00025a028635 , Zm00025a044778
Brachypodium KQK04605 , KQK08627 , KQK08626
Barley HORVU6Hr1G054760.1 , HORVU6Hr1G054760.2 , HORVU6Hr1G054760.3 , HORVU6Hr1G054760.4 , HORVU3Hr1G052820.5 , HORVU3Hr1G052820.6 , HORVU3Hr1G052820.1 , HORVU3Hr1G052820.8 , HORVU3Hr1G052820.2 , HORVU1Hr1G093720.4 , HORVU1Hr1G093720.5 , HORVU1Hr1G093720.2 , HORVU1Hr1G093720.3 , HORVU1Hr1G093720.1 , HORVU3Hr1G052820.7 , HORVU3Hr1G052820.4 , HORVU1Hr1G093720.8 , HORVU1Hr1G093720.9 , HORVU3Hr1G052820.3 , HORVU4Hr1G007060.1 , HORVU2Hr1G063720.1 , HORVU4Hr1G007060.3 , HORVU3Hr1G077280.5 , HORVU3Hr1G077280.4 , HORVU3Hr1G077280.7 , HORVU3Hr1G077280.6 , HORVU3Hr1G077280.1 , HORVU3Hr1G077280.3 , HORVU3Hr1G077280.2 , HORVU1Hr1G093680.2 , HORVU2Hr1G063710.2 , HORVU2Hr1G063710.1 , HORVU2Hr1G063710.6 , HORVU2Hr1G063710.5 , HORVU2Hr1G063710.4 , HORVU3Hr1G077290.1 , HORVU3Hr1G044700.2 , HORVU3Hr1G044700.3 , HORVU4Hr1G007060.2 , HORVU3Hr1G044700.1 , HORVU1Hr1G093720.10 , HORVU1Hr1G093720.11 , HORVU1Hr1G093720.12 , HORVU0Hr1G012080.1 , HORVU1Hr1G093680.1 , HORVU5Hr1G029200.1 , HORVU5Hr1G029200.2 , HORVU5Hr1G029200.3 , HORVU5Hr1G029200.4
Wheat TraesCS1D02G439000 , TraesCS1A02G429400 , TraesCS1B02G464300 , TraesCS3B02G246200 , TraesCS3B02G246200 , TraesCS3A02G215100
Populus -


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cDNA sequences
Sobic.009G252800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G142700 expressed protein -
2 Sobic.007G038800 expressed protein -
3 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
4 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
5 Sobic.009G171700 SAG20, putative, expressed -
6 Sobic.003G361500 zinc finger family protein, putative, expressed -
7 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
8 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
9 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
10 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
11 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
12 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
13 Sobic.001G078500 expressed protein -
14 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
15 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
16 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
17 Sobic.001G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
18 Sobic.002G123200 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
19 Sobic.002G129000 RING zinc finger protein, putative, expressed -
20 Sobic.006G207500 expressed protein -


Gene co-expression network
sample Sobic009G252800 Sobic009G252800 Sobic008G142700 Sobic008G142700 Sobic009G252800--Sobic008G142700 Sobic007G038800 Sobic007G038800 Sobic009G252800--Sobic007G038800 Sobic006G002500 Sobic006G002500 Sobic009G252800--Sobic006G002500 Sobic010G071200 Sobic010G071200 Sobic009G252800--Sobic010G071200 Sobic009G171700 Sobic009G171700 Sobic009G252800--Sobic009G171700 Sobic003G361500 Sobic003G361500 Sobic009G252800--Sobic003G361500 Sobic001G136900 Sobic001G136900 Sobic009G252800--Sobic001G136900 Sobic004G316900 Sobic004G316900 Sobic009G252800--Sobic004G316900 Sobic010G055500 Sobic010G055500 Sobic009G252800--Sobic010G055500 Sobic008G142700--Sobic010G071200 Sobic001G512900 Sobic001G512900 Sobic008G142700--Sobic001G512900 Sobic008G142700--Sobic010G055500 Sobic001G149700 Sobic001G149700 Sobic008G142700--Sobic001G149700 Sobic007G063200 Sobic007G063200 Sobic008G142700--Sobic007G063200 Sobic003G350600 Sobic003G350600 Sobic008G142700--Sobic003G350600 Sobic006G109300 Sobic006G109300 Sobic008G142700--Sobic006G109300 Sobic009G246950 Sobic009G246950 Sobic008G142700--Sobic009G246950 Sobic001G478300 Sobic001G478300 Sobic008G142700--Sobic001G478300 Sobic009G036900 Sobic009G036900 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic003G189900 Sobic003G189900 Sobic007G038800--Sobic003G189900 Sobic007G192100 Sobic007G192100 Sobic007G038800--Sobic007G192100 Sobic009G034400 Sobic009G034400 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic007G038800--Sobic009G252800 Sobic008G108500 Sobic008G108500 Sobic007G038800--Sobic008G108500 Sobic001G126200 Sobic001G126200 Sobic007G038800--Sobic001G126200 Sobic006G002500--Sobic009G246950 Sobic002G256300 Sobic002G256300 Sobic006G002500--Sobic002G256300 Sobic001G390500 Sobic001G390500 Sobic006G002500--Sobic001G390500 Sobic007G203700 Sobic007G203700 Sobic006G002500--Sobic007G203700 Sobic001G532100 Sobic001G532100 Sobic006G002500--Sobic001G532100 Sobic010G193800 Sobic010G193800 Sobic006G002500--Sobic010G193800 Sobic006G002500--Sobic001G512900 Sobic003G038600 Sobic003G038600 Sobic006G002500--Sobic003G038600 Sobic006G002500--Sobic003G189900 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G071200--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic001G078500 Sobic001G078500 Sobic009G171700--Sobic001G078500 Sobic010G168600 Sobic010G168600 Sobic009G171700--Sobic010G168600 Sobic009G171700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic009G171700--Sobic004G293700 Sobic010G083700 Sobic010G083700 Sobic009G171700--Sobic010G083700 Sobic010G253800 Sobic010G253800 Sobic009G171700--Sobic010G253800 Sobic008G180900 Sobic008G180900 Sobic009G171700--Sobic008G180900 Sobic007G186300 Sobic007G186300 Sobic009G171700--Sobic007G186300 Sobic009G171700--Sobic002G256300 Sobic008G046600 Sobic008G046600 Sobic003G361500--Sobic008G046600 Sobic003G361500--Sobic006G109300 Sobic001G294700 Sobic001G294700 Sobic003G361500--Sobic001G294700 Sobic004G319300 Sobic004G319300 Sobic003G361500--Sobic004G319300 Sobic003G361500--Sobic009G252800 Sobic004G059000 Sobic004G059000 Sobic003G361500--Sobic004G059000 Sobic007G152101 Sobic007G152101 Sobic003G361500--Sobic007G152101 Sobic003G361500--Sobic008G142700 Sobic006G207500 Sobic006G207500 Sobic003G361500--Sobic006G207500 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic001G136900--Sobic002G256300 Sobic001G136900--Sobic004G316900 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic004G316900--Sobic001G136900 Sobic002G204000 Sobic002G204000 Sobic004G316900--Sobic002G204000 Sobic004G316900--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic004G316900--Sobic001G529000 Sobic003G316850 Sobic003G316850 Sobic004G316900--Sobic003G316850 Sobic004G316900--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic004G316900--Sobic004G226800 Sobic004G316900--Sobic007G203700 Sobic004G316900--Sobic001G439600 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic010G055500--Sobic004G231400 Sobic010G055500--Sobic001G512900 Sobic010G055500--Sobic006G109300 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic004G150400 Sobic004G150400 Sobic010G055500--Sobic004G150400
Octagon: transcription factors


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