Gene annotation
Transcriptome id Sobic.001G129300.1
Synonym Sb01g011330
Functional annotation ribosomal L18p/L5e family protein, putative, expressed
UniProt C5WNY0
Pfam PF00861
Panther DB PTHR12899:SF10 PTHR12899
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003735; structural constituent of ribosome GO:0005622intracellular GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT5G27820 : Ribosomal L18p/L5e family protein
RAP-DB (Rice) LOC_Os03g48840.1 : ribosomal L18p/L5e family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
2 Sobic.006G262900 expressed protein -
3 Sobic.001G543300 dehydrogenase, putative, expressed -
4 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
5 Sobic.006G183000 RING zinc finger protein, putative, expressed -
6 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
7 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
8 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
9 Sobic.007G167700 expressed protein -
10 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
11 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
12 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
13 Sobic.006G242300 - -
14 Sobic.001G175800 expressed protein -
15 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
16 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
17 Sobic.002G123200 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
18 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
19 Sobic.004G272300 expressed protein -
20 Sobic.007G079700 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic001G129300 Sobic001G129300 Sobic001G136900 Sobic001G136900 Sobic001G129300--Sobic001G136900 Sobic006G262900 Sobic006G262900 Sobic001G129300--Sobic006G262900 Sobic001G543300 Sobic001G543300 Sobic001G129300--Sobic001G543300 Sobic007G126200 Sobic007G126200 Sobic001G129300--Sobic007G126200 Sobic006G183000 Sobic006G183000 Sobic001G129300--Sobic006G183000 Sobic003G250500 Sobic003G250500 Sobic001G129300--Sobic003G250500 Sobic009G033900 Sobic009G033900 Sobic001G129300--Sobic009G033900 Sobic003G226500 Sobic003G226500 Sobic001G129300--Sobic003G226500 Sobic007G167700 Sobic007G167700 Sobic001G129300--Sobic007G167700 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic010G083700 Sobic010G083700 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic001G136900--Sobic006G183000 Sobic001G136900--Sobic006G262900 Sobic001G136900--Sobic001G129300 Sobic009G198500 Sobic009G198500 Sobic006G262900--Sobic009G198500 Sobic003G124800 Sobic003G124800 Sobic006G262900--Sobic003G124800 Sobic006G262900--Sobic006G263900 Sobic006G262900--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic006G262900--Sobic001G054200 Sobic006G262900--Sobic010G083700 Sobic006G262900--Sobic001G129300 Sobic007G203700 Sobic007G203700 Sobic006G262900--Sobic007G203700 Sobic007G079700 Sobic007G079700 Sobic006G262900--Sobic007G079700 Sobic001G294200 Sobic001G294200 Sobic001G543300--Sobic001G294200 Sobic001G543300--Sobic007G167700 Sobic001G543300--Sobic007G203700 Sobic008G058300 Sobic008G058300 Sobic001G543300--Sobic008G058300 Sobic001G543300--Sobic004G316900 Sobic001G543300--Sobic001G129300 Sobic004G060600 Sobic004G060600 Sobic001G543300--Sobic004G060600 Sobic004G018800 Sobic004G018800 Sobic001G543300--Sobic004G018800 Sobic006G242300 Sobic006G242300 Sobic001G543300--Sobic006G242300 Sobic001G149700 Sobic001G149700 Sobic007G126200--Sobic001G149700 Sobic010G071200 Sobic010G071200 Sobic007G126200--Sobic010G071200 Sobic009G036900 Sobic009G036900 Sobic007G126200--Sobic009G036900 Sobic003G273100 Sobic003G273100 Sobic007G126200--Sobic003G273100 Sobic004G231400 Sobic004G231400 Sobic007G126200--Sobic004G231400 Sobic010G055500 Sobic010G055500 Sobic007G126200--Sobic010G055500 Sobic003G116700 Sobic003G116700 Sobic007G126200--Sobic003G116700 Sobic002G068300 Sobic002G068300 Sobic007G126200--Sobic002G068300 Sobic001G350501 Sobic001G350501 Sobic007G126200--Sobic001G350501 Sobic006G183000--Sobic002G129000 Sobic001G294900 Sobic001G294900 Sobic006G183000--Sobic001G294900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic009G033900--Sobic006G183000 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic004G074300 Sobic004G074300 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic009G033900--Sobic006G252100 Sobic003G226500--Sobic003G250500 Sobic004G104900 Sobic004G104900 Sobic003G226500--Sobic004G104900 Sobic003G007500 Sobic003G007500 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic003G226500--Sobic001G136900 Sobic003G226500--Sobic010G083700 Sobic004G226800 Sobic004G226800 Sobic003G226500--Sobic004G226800 Sobic003G226500--Sobic001G512600 Sobic003G226500--Sobic001G054200 Sobic001G529000 Sobic001G529000 Sobic007G167700--Sobic001G529000 Sobic007G167700--Sobic007G203700 Sobic005G157200 Sobic005G157200 Sobic007G167700--Sobic005G157200 Sobic007G167700--Sobic008G058300 Sobic001G398600 Sobic001G398600 Sobic007G167700--Sobic001G398600 Sobic007G167700--Sobic001G136900 Sobic004G072800 Sobic004G072800 Sobic007G167700--Sobic004G072800 Sobic007G167700--Sobic001G054200 Sobic004G300900 Sobic004G300900 Sobic007G167700--Sobic004G300900
Octagon: transcription factors


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