Gene annotation
Transcriptome id Sobic.006G052200.1
Synonym Sb06g013900
Functional annotation nodulin, putative, expressed
UniProt C5YET2
Pfam PF06813
Panther DB PTHR21576 PTHR21576:SF27
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01930 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os04g31924.1 : nodulin, putative, expressed
MaizeGDB (Corn) Zm00025a011759 , Zm00025a011756 , Zm00025a030410 , Zm00025a055904
Brachypodium KQJ99135 , KQJ82281 , PNT60921 , PNT60920
Barley HORVU2Hr1G069980.1 , HORVU2Hr1G069980.2 , HORVU2Hr1G069980.3 , HORVU2Hr1G069980.4 , HORVU2Hr1G069980.5 , HORVU2Hr1G069980.6 , HORVU2Hr1G069980.7 , HORVU2Hr1G069980.8 , HORVU2Hr1G069980.9
Wheat TraesCS2A02G284100 , TraesCS2D02G283000 , TraesCS7D02G262200 , TraesCS2B02G301000 , TraesCS7B02G159100 , TraesCS2B02G301000
Populus -


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cDNA sequences
Sobic.006G052200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G072200 lipase, putative, expressed -
2 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
3 Sobic.003G402200 sensitivity to red light reduced protein 1, putative, expressed -
4 Sobic.001G276100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
5 Sobic.008G111300 transporter family protein, putative, expressed -
6 Sobic.001G320700 prephenate dehydratase domain containing protein, expressed -
7 Sobic.002G142066 - K18045: SIW14, tyrosine-protein phosphatase SIW14
8 Sobic.002G193400 lipase, putative, expressed K18875: enhanced disease susceptibility 1 protein
9 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
10 Sobic.001G416300 expressed protein -
11 Sobic.009G000900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase
12 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
13 Sobic.002G226100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
15 Sobic.004G343100 YCF37, putative, expressed -
16 Sobic.004G164200 heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
17 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
18 Sobic.009G141400 transcriptional regulator, putative, expressed -
19 Sobic.009G190800 thioredoxin, putative, expressed K03671: thioredoxin 1
20 Sobic.003G237000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed -


Gene co-expression network
sample Sobic006G052200 Sobic006G052200 Sobic005G072200 Sobic005G072200 Sobic006G052200--Sobic005G072200 Sobic001G161300 Sobic001G161300 Sobic006G052200--Sobic001G161300 Sobic003G402200 Sobic003G402200 Sobic006G052200--Sobic003G402200 Sobic001G276100 Sobic001G276100 Sobic006G052200--Sobic001G276100 Sobic008G111300 Sobic008G111300 Sobic006G052200--Sobic008G111300 Sobic001G320700 Sobic001G320700 Sobic006G052200--Sobic001G320700 Sobic002G142066 Sobic002G142066 Sobic006G052200--Sobic002G142066 Sobic002G193400 Sobic002G193400 Sobic006G052200--Sobic002G193400 Sobic001G404500 Sobic001G404500 Sobic006G052200--Sobic001G404500 Sobic003G359900 Sobic003G359900 Sobic005G072200--Sobic003G359900 Sobic005G072200--Sobic006G052200 Sobic002G073900 Sobic002G073900 Sobic005G072200--Sobic002G073900 Sobic010G080300 Sobic010G080300 Sobic005G072200--Sobic010G080300 Sobic009G190800 Sobic009G190800 Sobic005G072200--Sobic009G190800 Sobic001G351100 Sobic001G351100 Sobic005G072200--Sobic001G351100 Sobic005G072200--Sobic003G402200 Sobic004G096100 Sobic004G096100 Sobic005G072200--Sobic004G096100 Sobic001G314900 Sobic001G314900 Sobic005G072200--Sobic001G314900 Sobic002G038300 Sobic002G038300 Sobic001G161300--Sobic002G038300 Sobic004G007500 Sobic004G007500 Sobic001G161300--Sobic004G007500 Sobic002G386400 Sobic002G386400 Sobic001G161300--Sobic002G386400 Sobic004G068700 Sobic004G068700 Sobic001G161300--Sobic004G068700 Sobic001G161300--Sobic001G276100 Sobic002G226100 Sobic002G226100 Sobic001G161300--Sobic002G226100 Sobic002G384400 Sobic002G384400 Sobic001G161300--Sobic002G384400 Sobic004G343100 Sobic004G343100 Sobic001G161300--Sobic004G343100 Sobic009G000900 Sobic009G000900 Sobic001G161300--Sobic009G000900 Sobic001G145050 Sobic001G145050 Sobic003G402200--Sobic001G145050 Sobic009G205600 Sobic009G205600 Sobic003G402200--Sobic009G205600 Sobic004G078600 Sobic004G078600 Sobic003G402200--Sobic004G078600 Sobic003G151800 Sobic003G151800 Sobic003G402200--Sobic003G151800 Sobic003G402200--Sobic001G320700 Sobic001G201800 Sobic001G201800 Sobic003G402200--Sobic001G201800 Sobic001G427700 Sobic001G427700 Sobic003G402200--Sobic001G427700 Sobic005G089000 Sobic005G089000 Sobic003G402200--Sobic005G089000 Sobic003G402200--Sobic008G111300 Sobic001G276100--Sobic001G161300 Sobic001G276100--Sobic009G000900 Sobic001G276100--Sobic004G007500 Sobic001G276100--Sobic002G226100 Sobic009G197300 Sobic009G197300 Sobic001G276100--Sobic009G197300 Sobic003G355800 Sobic003G355800 Sobic001G276100--Sobic003G355800 Sobic003G214000 Sobic003G214000 Sobic001G276100--Sobic003G214000 Sobic001G276100--Sobic006G052200 Sobic001G276100--Sobic002G384400 Sobic008G111300--Sobic004G068700 Sobic008G111300--Sobic003G214000 Sobic001G179100 Sobic001G179100 Sobic008G111300--Sobic001G179100 Sobic008G111300--Sobic004G078600 Sobic008G111300--Sobic001G201800 Sobic003G361900 Sobic003G361900 Sobic008G111300--Sobic003G361900 Sobic008G111300--Sobic001G320700 Sobic004G209500 Sobic004G209500 Sobic008G111300--Sobic004G209500 Sobic008G111300--Sobic003G402200 Sobic001G320700--Sobic003G214000 Sobic004G217700 Sobic004G217700 Sobic001G320700--Sobic004G217700 Sobic001G320700--Sobic001G201800 Sobic002G423600 Sobic002G423600 Sobic001G320700--Sobic002G423600 Sobic001G320700--Sobic004G078600 Sobic010G214200 Sobic010G214200 Sobic001G320700--Sobic010G214200 Sobic006G045000 Sobic006G045000 Sobic001G320700--Sobic006G045000 Sobic001G320700--Sobic003G402200 Sobic003G248901 Sobic003G248901 Sobic001G320700--Sobic003G248901 Sobic002G404200 Sobic002G404200 Sobic002G142066--Sobic002G404200 Sobic004G224500 Sobic004G224500 Sobic002G142066--Sobic004G224500 Sobic009G141400 Sobic009G141400 Sobic002G142066--Sobic009G141400 Sobic008G063200 Sobic008G063200 Sobic002G142066--Sobic008G063200 Sobic006G214700 Sobic006G214700 Sobic002G142066--Sobic006G214700 Sobic003G179400 Sobic003G179400 Sobic002G142066--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic002G142066--Sobic001G006000 Sobic003G208300 Sobic003G208300 Sobic002G142066--Sobic003G208300 Sobic008G193300 Sobic008G193300 Sobic002G142066--Sobic008G193300 Sobic001G427500 Sobic001G427500 Sobic002G193400--Sobic001G427500 Sobic001G022600 Sobic001G022600 Sobic002G193400--Sobic001G022600 Sobic002G339500 Sobic002G339500 Sobic002G193400--Sobic002G339500 Sobic002G193400--Sobic003G402200 Sobic006G127400 Sobic006G127400 Sobic002G193400--Sobic006G127400 Sobic002G193400--Sobic009G190800 Sobic002G193400--Sobic005G072200 Sobic001G075000 Sobic001G075000 Sobic002G193400--Sobic001G075000 Sobic002G193400--Sobic006G052200 Sobic006G123500 Sobic006G123500 Sobic001G404500--Sobic006G123500 Sobic004G063200 Sobic004G063200 Sobic001G404500--Sobic004G063200 Sobic002G281000 Sobic002G281000 Sobic001G404500--Sobic002G281000 Sobic008G063100 Sobic008G063100 Sobic001G404500--Sobic008G063100 Sobic001G525900 Sobic001G525900 Sobic001G404500--Sobic001G525900 Sobic003G410900 Sobic003G410900 Sobic001G404500--Sobic003G410900 Sobic004G268500 Sobic004G268500 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic004G099700 Sobic004G099700 Sobic001G404500--Sobic004G099700
Octagon: transcription factors


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