Gene annotation
Transcriptome id Sobic.008G137800.1
Synonym Sb08g018860
Functional annotation expressed protein
UniProt C5YQ97
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT1G74120 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os12g30610.1 : expressed protein
MaizeGDB (Corn) Zm00025a025400
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G137800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G214000 Highly abundant under cold stress(PubMedID : 26645959)@heat shock protein DnaJ, putative, expressed -
2 Sobic.004G078600 lipoxygenase, putative, expressed K00454: lipoxygenase
3 Sobic.001G145050 - -
4 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
5 Sobic.001G315800 shikimate/quinate 5-dehydrogenase, putative, expressed -
6 Sobic.009G152400 glutamine cyclotransferase precursor, putative, expressed -
7 Sobic.003G402200 sensitivity to red light reduced protein 1, putative, expressed -
8 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
9 Sobic.006G060800 basic proline-rich protein, putative, expressed -
10 Sobic.003G151800 expressed protein -
11 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
12 Sobic.009G075100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@lachrymatory factor synthase, putative, expressed -
13 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
14 Sobic.005G085500 - -
15 Sobic.008G111300 transporter family protein, putative, expressed -
16 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
17 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
18 Sobic.001G320700 prephenate dehydratase domain containing protein, expressed -
19 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.002G349400 - -


Gene co-expression network
sample Sobic008G137800 Sobic008G137800 Sobic003G214000 Sobic003G214000 Sobic008G137800--Sobic003G214000 Sobic004G078600 Sobic004G078600 Sobic008G137800--Sobic004G078600 Sobic001G145050 Sobic001G145050 Sobic008G137800--Sobic001G145050 Sobic001G179100 Sobic001G179100 Sobic008G137800--Sobic001G179100 Sobic001G315800 Sobic001G315800 Sobic008G137800--Sobic001G315800 Sobic009G152400 Sobic009G152400 Sobic008G137800--Sobic009G152400 Sobic003G402200 Sobic003G402200 Sobic008G137800--Sobic003G402200 Sobic004G068700 Sobic004G068700 Sobic008G137800--Sobic004G068700 Sobic006G060800 Sobic006G060800 Sobic008G137800--Sobic006G060800 Sobic003G214000--Sobic001G179100 Sobic003G214000--Sobic004G068700 Sobic003G214000--Sobic004G078600 Sobic002G155900 Sobic002G155900 Sobic003G214000--Sobic002G155900 Sobic001G320700 Sobic001G320700 Sobic003G214000--Sobic001G320700 Sobic003G214000--Sobic008G137800 Sobic009G075100 Sobic009G075100 Sobic003G214000--Sobic009G075100 Sobic001G201800 Sobic001G201800 Sobic003G214000--Sobic001G201800 Sobic008G111300 Sobic008G111300 Sobic003G214000--Sobic008G111300 Sobic004G078600--Sobic001G201800 Sobic002G423600 Sobic002G423600 Sobic004G078600--Sobic002G423600 Sobic009G115400 Sobic009G115400 Sobic004G078600--Sobic009G115400 Sobic002G041800 Sobic002G041800 Sobic004G078600--Sobic002G041800 Sobic004G078600--Sobic009G075100 Sobic005G182701 Sobic005G182701 Sobic004G078600--Sobic005G182701 Sobic001G012000 Sobic001G012000 Sobic004G078600--Sobic001G012000 Sobic009G252100 Sobic009G252100 Sobic004G078600--Sobic009G252100 Sobic007G055600 Sobic007G055600 Sobic004G078600--Sobic007G055600 Sobic009G255100 Sobic009G255100 Sobic001G145050--Sobic009G255100 Sobic001G145050--Sobic002G041800 Sobic002G366100 Sobic002G366100 Sobic001G145050--Sobic002G366100 Sobic001G145050--Sobic006G060800 Sobic001G145050--Sobic003G402200 Sobic001G145050--Sobic004G078600 Sobic005G085500 Sobic005G085500 Sobic001G145050--Sobic005G085500 Sobic002G271600 Sobic002G271600 Sobic001G145050--Sobic002G271600 Sobic002G209100 Sobic002G209100 Sobic001G145050--Sobic002G209100 Sobic001G179100--Sobic004G068700 Sobic001G179100--Sobic003G214000 Sobic001G179100--Sobic002G155900 Sobic002G287000 Sobic002G287000 Sobic001G179100--Sobic002G287000 Sobic009G238100 Sobic009G238100 Sobic001G179100--Sobic009G238100 Sobic003G255100 Sobic003G255100 Sobic001G179100--Sobic003G255100 Sobic001G161300 Sobic001G161300 Sobic001G179100--Sobic001G161300 Sobic001G179100--Sobic008G111300 Sobic001G179100--Sobic002G366100 Sobic001G315800--Sobic001G201800 Sobic001G315800--Sobic004G078600 Sobic004G209500 Sobic004G209500 Sobic001G315800--Sobic004G209500 Sobic006G045000 Sobic006G045000 Sobic001G315800--Sobic006G045000 Sobic001G315800--Sobic005G085500 Sobic001G315800--Sobic002G209100 Sobic002G349400 Sobic002G349400 Sobic001G315800--Sobic002G349400 Sobic001G315800--Sobic002G423600 Sobic004G195800 Sobic004G195800 Sobic001G315800--Sobic004G195800 Sobic009G152400--Sobic008G137800 Sobic006G170200 Sobic006G170200 Sobic009G152400--Sobic006G170200 Sobic009G152400--Sobic008G111300 Sobic003G096500 Sobic003G096500 Sobic009G152400--Sobic003G096500 Sobic009G152400--Sobic004G078600 Sobic009G019000 Sobic009G019000 Sobic009G152400--Sobic009G019000 Sobic001G276100 Sobic001G276100 Sobic009G152400--Sobic001G276100 Sobic009G000900 Sobic009G000900 Sobic009G152400--Sobic009G000900 Sobic003G208300 Sobic003G208300 Sobic009G152400--Sobic003G208300 Sobic003G402200--Sobic001G145050 Sobic009G205600 Sobic009G205600 Sobic003G402200--Sobic009G205600 Sobic003G402200--Sobic004G078600 Sobic003G151800 Sobic003G151800 Sobic003G402200--Sobic003G151800 Sobic003G402200--Sobic001G320700 Sobic003G402200--Sobic001G201800 Sobic001G427700 Sobic001G427700 Sobic003G402200--Sobic001G427700 Sobic005G089000 Sobic005G089000 Sobic003G402200--Sobic005G089000 Sobic003G402200--Sobic008G111300 Sobic004G068700--Sobic001G179100 Sobic004G068700--Sobic003G214000 Sobic004G068700--Sobic002G287000 Sobic004G068700--Sobic001G161300 Sobic004G068700--Sobic008G111300 Sobic002G384400 Sobic002G384400 Sobic004G068700--Sobic002G384400 Sobic004G068700--Sobic002G366100 Sobic002G226100 Sobic002G226100 Sobic004G068700--Sobic002G226100 Sobic002G386400 Sobic002G386400 Sobic004G068700--Sobic002G386400 Sobic008G060300 Sobic008G060300 Sobic006G060800--Sobic008G060300 Sobic006G060800--Sobic009G252100 Sobic006G060800--Sobic002G041800 Sobic004G063200 Sobic004G063200 Sobic006G060800--Sobic004G063200 Sobic006G060800--Sobic001G201800 Sobic006G060800--Sobic004G078600 Sobic007G089300 Sobic007G089300 Sobic006G060800--Sobic007G089300 Sobic006G060800--Sobic001G145050 Sobic006G060800--Sobic002G366100
Octagon: transcription factors


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