Gene annotation
Transcriptome id Sobic.001G058400.1
Synonym Sb01g005310, OTP85
Functional annotation pentatricopeptide, putative, expressed
UniProt C5WX84
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF44
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02980 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g58100.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a016580
Brachypodium KQK12722
Barley HORVU5Hr1G105080.2 , HORVU5Hr1G105080.1
Wheat TraesCS5A02G435900
Populus PNT32306


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
2 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
3 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
4 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
6 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
7 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
8 Sobic.009G130800 tat pathway signal sequence family protein, expressed -
9 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
10 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
12 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
13 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
14 Sobic.002G251400 expressed protein -
15 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
16 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
17 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
18 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
19 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A


Gene co-expression network
sample Sobic001G058400 Sobic001G058400 Sobic007G090537 Sobic007G090537 Sobic001G058400--Sobic007G090537 Sobic010G095200 Sobic010G095200 Sobic001G058400--Sobic010G095200 Sobic007G171800 Sobic007G171800 Sobic001G058400--Sobic007G171800 Sobic007G034500 Sobic007G034500 Sobic001G058400--Sobic007G034500 Sobic006G263800 Sobic006G263800 Sobic001G058400--Sobic006G263800 Sobic003G225100 Sobic003G225100 Sobic001G058400--Sobic003G225100 Sobic001G148200 Sobic001G148200 Sobic001G058400--Sobic001G148200 Sobic009G130800 Sobic009G130800 Sobic001G058400--Sobic009G130800 Sobic007G013400 Sobic007G013400 Sobic001G058400--Sobic007G013400 Sobic007G090537--Sobic009G130800 Sobic007G090537--Sobic010G095200 Sobic003G261200 Sobic003G261200 Sobic007G090537--Sobic003G261200 Sobic003G292300 Sobic003G292300 Sobic007G090537--Sobic003G292300 Sobic007G090537--Sobic007G171800 Sobic007G090537--Sobic003G225100 Sobic005G110481 Sobic005G110481 Sobic007G090537--Sobic005G110481 Sobic004G164100 Sobic004G164100 Sobic007G090537--Sobic004G164100 Sobic007G090537--Sobic001G058400 Sobic003G386300 Sobic003G386300 Sobic010G095200--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic010G095200--Sobic001G122400 Sobic001G240000 Sobic001G240000 Sobic010G095200--Sobic001G240000 Sobic010G095200--Sobic007G090537 Sobic010G095200--Sobic004G164100 Sobic001G527100 Sobic001G527100 Sobic010G095200--Sobic001G527100 Sobic002G251400 Sobic002G251400 Sobic010G095200--Sobic002G251400 Sobic002G198000 Sobic002G198000 Sobic010G095200--Sobic002G198000 Sobic010G095200--Sobic009G130800 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic007G034500--Sobic007G171800 Sobic004G044000 Sobic004G044000 Sobic007G034500--Sobic004G044000 Sobic006G280050 Sobic006G280050 Sobic007G034500--Sobic006G280050 Sobic004G191200 Sobic004G191200 Sobic007G034500--Sobic004G191200 Sobic001G357200 Sobic001G357200 Sobic007G034500--Sobic001G357200 Sobic009G001500 Sobic009G001500 Sobic007G034500--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic007G034500--Sobic001G383900 Sobic001G191000 Sobic001G191000 Sobic007G034500--Sobic001G191000 Sobic001G027600 Sobic001G027600 Sobic007G034500--Sobic001G027600 Sobic007G116100 Sobic007G116100 Sobic006G263800--Sobic007G116100 Sobic002G190100 Sobic002G190100 Sobic006G263800--Sobic002G190100 Sobic002G140000 Sobic002G140000 Sobic006G263800--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic006G263800--Sobic001G281500 Sobic005G022800 Sobic005G022800 Sobic006G263800--Sobic005G022800 Sobic001G099000 Sobic001G099000 Sobic006G263800--Sobic001G099000 Sobic010G027200 Sobic010G027200 Sobic006G263800--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic006G263800--Sobic006G237100 Sobic001G120000 Sobic001G120000 Sobic006G263800--Sobic001G120000 Sobic003G225100--Sobic001G122400 Sobic003G225100--Sobic007G171800 Sobic003G225100--Sobic005G110481 Sobic003G225100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic003G225100--Sobic004G335800 Sobic003G225100--Sobic007G013400 Sobic003G225100--Sobic002G251400 Sobic003G225100--Sobic003G386300 Sobic003G225100--Sobic001G527100 Sobic001G148200--Sobic005G110481 Sobic003G444500 Sobic003G444500 Sobic001G148200--Sobic003G444500 Sobic001G148200--Sobic009G042200 Sobic001G148200--Sobic007G171800 Sobic001G148200--Sobic002G251400 Sobic001G148200--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic001G148200--Sobic002G013700 Sobic001G148200--Sobic007G034500 Sobic001G148200--Sobic009G001500 Sobic009G130800--Sobic007G090537 Sobic009G130800--Sobic003G261200 Sobic009G130800--Sobic010G095200 Sobic009G130800--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic009G130800--Sobic003G295800 Sobic009G130800--Sobic004G164100 Sobic009G130800--Sobic009G001500 Sobic001G475600 Sobic001G475600 Sobic009G130800--Sobic001G475600 Sobic007G211100 Sobic007G211100 Sobic009G130800--Sobic007G211100 Sobic003G383500 Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic007G013400--Sobic003G295800 Sobic007G013400--Sobic009G001500 Sobic007G013400--Sobic003G261200 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic001G040000 Sobic001G040000 Sobic007G013400--Sobic001G040000 Sobic007G013400--Sobic007G211100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.