Gene annotation
Transcriptome id Sobic.001G401700.1
Synonym AGD2, Sb01g038010
Functional annotation aminotransferase, classes I and II, domain containing protein, expressed
UniProt C5WNE7
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF376
NCBI CDD KOG0257; Kynurenine aminotransferase, glutamine transaminase K
KEGG Orthology K10206; LL-diaminopimelate aminotransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G33680 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os03g18810.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000538 , Zm00025a002060
Brachypodium KQK15243 , KQK19327 , PNT74747
Barley HORVU7Hr1G106770.8 , HORVU7Hr1G106770.9 , HORVU7Hr1G106770.2 , HORVU7Hr1G106770.3 , HORVU7Hr1G106770.1 , HORVU7Hr1G106770.6 , HORVU7Hr1G106770.7 , HORVU7Hr1G106770.4 , HORVU7Hr1G106770.5 , HORVU4Hr1G054920.8 , HORVU4Hr1G054920.9 , HORVU4Hr1G054920.4 , HORVU4Hr1G054920.5 , HORVU4Hr1G054920.6 , HORVU4Hr1G054920.7 , HORVU4Hr1G054920.1 , HORVU4Hr1G054920.2 , HORVU4Hr1G054920.3 , HORVU7Hr1G106770.10
Wheat TraesCS4A02G116000 , TraesCS4A02G116000 , TraesCS7A02G465200 , TraesCS7A02G465200 , TraesCS7A02G465200 , TraesCS1B02G115200 , TraesCS4D02G189600 , TraesCS4D02G189600 , TraesCS4B02G188200 , TraesCS4B02G188200 , TraesCS7D02G452900 , TraesCS7D02G452900 , TraesCS7D02G452900 , TraesCS7B02G365700 , TraesCS7B02G365700 , TraesCS7B02G365700
Populus -


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cDNA sequences
Sobic.001G401700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433100 expressed protein -
2 Sobic.006G088000 translocon Tic40, putative, expressed -
3 Sobic.002G343400 tic20, putative, expressed -
4 Sobic.004G359100 expressed protein -
5 Sobic.008G090900 expressed protein -
6 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
7 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
8 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
9 Sobic.001G120500 toc64, putative, expressed -
10 Sobic.002G431300 uncharacterized ACR, YagE family COG1723 containing protein, expressed -
11 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
12 Sobic.004G214400 tic20, putative, expressed -
13 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
14 Sobic.001G058200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
16 Sobic.001G166600 semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00145: N-acetyl-gamma-glutamyl-phosphate reductase
17 Sobic.009G124000 mesophyll envelope protein(PubMedID : 26976818)@expressed protein -
18 Sobic.008G183700 cbbY protein-related, putative, expressed -
19 Sobic.001G003900 pentatricopeptide, putative, expressed -
20 Sobic.007G101300 expressed protein -


Gene co-expression network
sample Sobic001G401700 Sobic001G401700 Sobic001G433100 Sobic001G433100 Sobic001G401700--Sobic001G433100 Sobic006G088000 Sobic006G088000 Sobic001G401700--Sobic006G088000 Sobic002G343400 Sobic002G343400 Sobic001G401700--Sobic002G343400 Sobic004G359100 Sobic004G359100 Sobic001G401700--Sobic004G359100 Sobic008G090900 Sobic008G090900 Sobic001G401700--Sobic008G090900 Sobic001G382800 Sobic001G382800 Sobic001G401700--Sobic001G382800 Sobic006G217000 Sobic006G217000 Sobic001G401700--Sobic006G217000 Sobic004G003900 Sobic004G003900 Sobic001G401700--Sobic004G003900 Sobic001G120500 Sobic001G120500 Sobic001G401700--Sobic001G120500 Sobic001G433100--Sobic001G401700 Sobic007G126900 Sobic007G126900 Sobic001G433100--Sobic007G126900 Sobic001G433100--Sobic008G090900 Sobic001G433100--Sobic006G088000 Sobic001G478600 Sobic001G478600 Sobic001G433100--Sobic001G478600 Sobic004G214400 Sobic004G214400 Sobic001G433100--Sobic004G214400 Sobic001G433100--Sobic004G003900 Sobic001G293300 Sobic001G293300 Sobic001G433100--Sobic001G293300 Sobic003G345900 Sobic003G345900 Sobic001G433100--Sobic003G345900 Sobic001G375000 Sobic001G375000 Sobic006G088000--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic006G088000--Sobic003G128400 Sobic006G088000--Sobic004G003900 Sobic006G088000--Sobic001G382800 Sobic003G162800 Sobic003G162800 Sobic006G088000--Sobic003G162800 Sobic003G045300 Sobic003G045300 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic010G255100 Sobic010G255100 Sobic006G088000--Sobic010G255100 Sobic006G088000--Sobic008G090900 Sobic002G343400--Sobic004G359100 Sobic004G163800 Sobic004G163800 Sobic002G343400--Sobic004G163800 Sobic003G234900 Sobic003G234900 Sobic002G343400--Sobic003G234900 Sobic002G343400--Sobic001G382800 Sobic002G343400--Sobic001G401700 Sobic001G327800 Sobic001G327800 Sobic002G343400--Sobic001G327800 Sobic002G431300 Sobic002G431300 Sobic002G343400--Sobic002G431300 Sobic004G238900 Sobic004G238900 Sobic002G343400--Sobic004G238900 Sobic003G067100 Sobic003G067100 Sobic002G343400--Sobic003G067100 Sobic004G359100--Sobic002G343400 Sobic004G359100--Sobic002G431300 Sobic005G082200 Sobic005G082200 Sobic004G359100--Sobic005G082200 Sobic004G359100--Sobic004G238900 Sobic004G359100--Sobic003G067100 Sobic004G359100--Sobic010G255100 Sobic003G083400 Sobic003G083400 Sobic004G359100--Sobic003G083400 Sobic004G359100--Sobic001G375000 Sobic004G359100--Sobic006G088000 Sobic008G090900--Sobic004G003900 Sobic009G092900 Sobic009G092900 Sobic008G090900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic008G090900--Sobic002G181132 Sobic008G090900--Sobic001G382800 Sobic008G067100 Sobic008G067100 Sobic008G090900--Sobic008G067100 Sobic008G090900--Sobic003G045300 Sobic008G090900--Sobic001G375000 Sobic008G090900--Sobic003G128400 Sobic008G090900--Sobic006G088000 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic001G382800--Sobic008G090900 Sobic001G003900 Sobic001G003900 Sobic001G382800--Sobic001G003900 Sobic002G156100 Sobic002G156100 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic002G293600 Sobic002G293600 Sobic001G382800--Sobic002G293600 Sobic001G382800--Sobic003G045300 Sobic006G217000--Sobic001G401700 Sobic005G014700 Sobic005G014700 Sobic006G217000--Sobic005G014700 Sobic006G217000--Sobic001G120500 Sobic001G166600 Sobic001G166600 Sobic006G217000--Sobic001G166600 Sobic006G217000--Sobic003G345900 Sobic006G217000--Sobic008G067100 Sobic003G369400 Sobic003G369400 Sobic006G217000--Sobic003G369400 Sobic006G217000--Sobic006G088000 Sobic006G217000--Sobic002G343400 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic004G003900--Sobic001G003900 Sobic010G265300 Sobic010G265300 Sobic001G120500--Sobic010G265300 Sobic005G172500 Sobic005G172500 Sobic001G120500--Sobic005G172500 Sobic001G244300 Sobic001G244300 Sobic001G120500--Sobic001G244300 Sobic001G493200 Sobic001G493200 Sobic001G120500--Sobic001G493200 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic008G051200 Sobic008G051200 Sobic001G120500--Sobic008G051200 Sobic009G056200 Sobic009G056200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500
Octagon: transcription factors


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