Gene annotation
Transcriptome id Sobic.010G080100.1
Synonym Sb10g006950
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
integral membrane protein DUF6 containing protein, expressed
UniProt C5Z6F1
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF40
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G44800 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os06g10750.1 : integral membrane protein DUF6 containing protein, expressed
MaizeGDB (Corn) Zm00025a022241 , Zm00025a042505 , Zm00025a049597
Brachypodium KQK01685 , KQK01727 , KQK19049
Barley HORVU7Hr1G035430.5 , HORVU7Hr1G035430.7 , HORVU7Hr1G035430.1 , HORVU7Hr1G035430.2 , HORVU7Hr1G035430.3 , HORVU7Hr1G035430.6 , HORVU7Hr1G035430.4 , HORVU6Hr1G080270.9 , HORVU6Hr1G080270.8 , HORVU6Hr1G080270.3 , HORVU6Hr1G080270.1 , HORVU6Hr1G080270.6 , HORVU6Hr1G080270.5 , HORVU6Hr1G080270.4 , HORVU6Hr1G080270.22 , HORVU6Hr1G080270.21 , HORVU6Hr1G080270.19 , HORVU6Hr1G080270.18 , HORVU6Hr1G080270.12 , HORVU6Hr1G080270.11 , HORVU6Hr1G080270.10 , HORVU6Hr1G080270.17 , HORVU6Hr1G080270.16 , HORVU6Hr1G080270.15 , HORVU6Hr1G080270.14 , HORVU6Hr1G080220.1
Wheat TraesCS6D02G308900 , TraesCS7A02G169100 , TraesCS6B02G360800 , TraesCS7D02G170200 , TraesCS7B02G073900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G507300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.007G189500 - -
3 Sobic.008G009900 lipase-related, putative, expressed -
4 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
5 Sobic.004G053700 glyoxalase family protein, putative, expressed K00457: HPD, 4-hydroxyphenylpyruvate dioxygenase
6 Sobic.002G217400 HD domain containing protein, putative, expressed -
7 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
8 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.003G322700 expressed protein -
10 Sobic.001G050200 expressed protein -
11 Sobic.002G009700 AMP-binding domain containing protein, expressed -
12 Sobic.010G001500 AML1, putative, expressed -
13 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
14 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
15 Sobic.004G349400 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G372500 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
17 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
18 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
19 Sobic.007G026500 OsFBK21 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.001G443900 peptide transporter PTR2, putative, expressed -


Gene co-expression network
sample Sobic010G080100 Sobic010G080100 Sobic001G507300 Sobic001G507300 Sobic010G080100--Sobic001G507300 Sobic007G189500 Sobic007G189500 Sobic010G080100--Sobic007G189500 Sobic008G009900 Sobic008G009900 Sobic010G080100--Sobic008G009900 Sobic009G126900 Sobic009G126900 Sobic010G080100--Sobic009G126900 Sobic004G053700 Sobic004G053700 Sobic010G080100--Sobic004G053700 Sobic002G217400 Sobic002G217400 Sobic010G080100--Sobic002G217400 Sobic003G407300 Sobic003G407300 Sobic010G080100--Sobic003G407300 Sobic010G043400 Sobic010G043400 Sobic010G080100--Sobic010G043400 Sobic003G322700 Sobic003G322700 Sobic010G080100--Sobic003G322700 Sobic001G507300--Sobic003G407300 Sobic004G295800 Sobic004G295800 Sobic001G507300--Sobic004G295800 Sobic002G315200 Sobic002G315200 Sobic001G507300--Sobic002G315200 Sobic001G050200 Sobic001G050200 Sobic001G507300--Sobic001G050200 Sobic002G419800 Sobic002G419800 Sobic001G507300--Sobic002G419800 Sobic001G290100 Sobic001G290100 Sobic001G507300--Sobic001G290100 Sobic001G373200 Sobic001G373200 Sobic001G507300--Sobic001G373200 Sobic007G026500 Sobic007G026500 Sobic001G507300--Sobic007G026500 Sobic004G355000 Sobic004G355000 Sobic001G507300--Sobic004G355000 Sobic002G116800 Sobic002G116800 Sobic007G189500--Sobic002G116800 Sobic001G101100 Sobic001G101100 Sobic007G189500--Sobic001G101100 Sobic008G003900 Sobic008G003900 Sobic007G189500--Sobic008G003900 Sobic004G119100 Sobic004G119100 Sobic007G189500--Sobic004G119100 Sobic010G276900 Sobic010G276900 Sobic007G189500--Sobic010G276900 Sobic007G189500--Sobic010G080100 Sobic005G019600 Sobic005G019600 Sobic007G189500--Sobic005G019600 Sobic009G233300 Sobic009G233300 Sobic007G189500--Sobic009G233300 Sobic007G193700 Sobic007G193700 Sobic007G189500--Sobic007G193700 Sobic001G178700 Sobic001G178700 Sobic008G009900--Sobic001G178700 Sobic010G001500 Sobic010G001500 Sobic008G009900--Sobic010G001500 Sobic006G138400 Sobic006G138400 Sobic008G009900--Sobic006G138400 Sobic008G009900--Sobic003G407300 Sobic004G052900 Sobic004G052900 Sobic008G009900--Sobic004G052900 Sobic008G009900--Sobic004G355000 Sobic009G249200 Sobic009G249200 Sobic008G009900--Sobic009G249200 Sobic007G024700 Sobic007G024700 Sobic008G009900--Sobic007G024700 Sobic005G032800 Sobic005G032800 Sobic008G009900--Sobic005G032800 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic006G087700 Sobic006G087700 Sobic004G053700--Sobic006G087700 Sobic002G230100 Sobic002G230100 Sobic004G053700--Sobic002G230100 Sobic004G053700--Sobic003G322700 Sobic004G042300 Sobic004G042300 Sobic004G053700--Sobic004G042300 Sobic007G075400 Sobic007G075400 Sobic004G053700--Sobic007G075400 Sobic010G169000 Sobic010G169000 Sobic004G053700--Sobic010G169000 Sobic003G320700 Sobic003G320700 Sobic004G053700--Sobic003G320700 Sobic004G331100 Sobic004G331100 Sobic004G053700--Sobic004G331100 Sobic004G053700--Sobic002G009700 Sobic001G414500 Sobic001G414500 Sobic002G217400--Sobic001G414500 Sobic004G102400 Sobic004G102400 Sobic002G217400--Sobic004G102400 Sobic003G352600 Sobic003G352600 Sobic002G217400--Sobic003G352600 Sobic005G203800 Sobic005G203800 Sobic002G217400--Sobic005G203800 Sobic001G350900 Sobic001G350900 Sobic002G217400--Sobic001G350900 Sobic003G098000 Sobic003G098000 Sobic002G217400--Sobic003G098000 Sobic009G138100 Sobic009G138100 Sobic002G217400--Sobic009G138100 Sobic002G375300 Sobic002G375300 Sobic002G217400--Sobic002G375300 Sobic010G130200 Sobic010G130200 Sobic002G217400--Sobic010G130200 Sobic009G121100 Sobic009G121100 Sobic003G407300--Sobic009G121100 Sobic003G407300--Sobic001G373200 Sobic003G019100 Sobic003G019100 Sobic003G407300--Sobic003G019100 Sobic006G214500 Sobic006G214500 Sobic003G407300--Sobic006G214500 Sobic003G407300--Sobic001G507300 Sobic003G407300--Sobic004G295800 Sobic009G229800 Sobic009G229800 Sobic003G407300--Sobic009G229800 Sobic002G303000 Sobic002G303000 Sobic003G407300--Sobic002G303000 Sobic003G407300--Sobic007G024700 Sobic010G043400--Sobic009G126900 Sobic010G043400--Sobic004G124200 Sobic010G043400--Sobic002G009700 Sobic010G018100 Sobic010G018100 Sobic010G043400--Sobic010G018100 Sobic003G355600 Sobic003G355600 Sobic010G043400--Sobic003G355600 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic002G266000 Sobic002G266000 Sobic003G322700--Sobic002G266000 Sobic003G322700--Sobic006G204900 Sobic003G322700--Sobic010G001500 Sobic003G322700--Sobic004G355000 Sobic001G207400 Sobic001G207400 Sobic003G322700--Sobic001G207400 Sobic003G322700--Sobic003G355600 Sobic003G322700--Sobic006G087700 Sobic006G199000 Sobic006G199000 Sobic003G322700--Sobic006G199000 Sobic004G034600 Sobic004G034600 Sobic003G322700--Sobic004G034600
Octagon: transcription factors


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