Gene annotation
Transcriptome id Sobic.001G111500.1
Synonym Sb01g009930, HY8, FRE1, FHY2, PHYA, PHYA, phytochrome
Functional annotation far-red light perception and signal transduction (PubMedID : 14963106)
phytochrome A, putative, expressed
UniProt Q6S539 , Q53YS9 , Q6S540 , Q6S544 , A0A1Z5S590 , C6JSI9 , Q6S541 , Q6S542 , P93526
Pfam PF02518 PF00512 PF01590 PF08446 PF00989 PF00360
Panther DB PTHR24423 PTHR24423:SF519
NCBI CDD -
KEGG Orthology K12120; phytochrome A
Gene Ontology GO:0007165; signal transduction GO:0000155phosphorelay sensor kinase activity GO:0005515protein binding GO:0006355regulation of transcription, DNA-templated GO:0018298protein-chromophore linkage GO:0009584detection of visible light


Orthologs (automatic annotation)
TAIR AT1G09570 : phytochrome A
RAP-DB (Rice) LOC_Os03g51030.1 : phytochrome A, putative, expressed
MaizeGDB (Corn) Zm00025a007919 , Zm00025a016932
Brachypodium KQK13496 , KQK13497 , KQK13495
Barley HORVU2Hr1G030400.1 , HORVU4Hr1G008610.3 , HORVU4Hr1G008610.2 , HORVU4Hr1G008610.1 , HORVU4Hr1G008610.7 , HORVU4Hr1G008610.6 , HORVU4Hr1G008610.5 , HORVU4Hr1G008610.4 , HORVU4Hr1G008610.8 , HORVU5Hr1G007810.5 , HORVU5Hr1G007810.4 , HORVU5Hr1G007810.3 , HORVU0Hr1G023250.5 , HORVU0Hr1G023250.4 , HORVU1Hr1G068750.8 , HORVU1Hr1G068750.7 , HORVU1Hr1G068750.6
Wheat TraesCS4A02G262900 , TraesCS4D02G052200 , TraesCS4B02G052000
Populus PNT05869 , PNT05870 , PNT05871 , PNT05872


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G111366 - -
2 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G154100 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
4 Sobic.004G153400 OsFBK7 - F-box domain and kelch repeat containing protein, expressed -
5 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
6 Sobic.003G093300 - -
7 Sobic.010G042900 expressed protein -
8 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
9 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
10 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
11 Sobic.009G135800 CUE domain containing protein, expressed -
12 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
13 Sobic.010G199600 hydrolase, NUDIX family, domain containing protein, expressed -
14 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
15 Sobic.007G026500 OsFBK21 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.004G153501 - -
17 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
18 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
19 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
20 Sobic.007G190333 - -


Gene co-expression network
sample Sobic001G111500 Sobic001G111500 Sobic001G111366 Sobic001G111366 Sobic001G111500--Sobic001G111366 Sobic001G028700 Sobic001G028700 Sobic001G111500--Sobic001G028700 Sobic001G154100 Sobic001G154100 Sobic001G111500--Sobic001G154100 Sobic004G153400 Sobic004G153400 Sobic001G111500--Sobic004G153400 Sobic004G006300 Sobic004G006300 Sobic001G111500--Sobic004G006300 Sobic003G093300 Sobic003G093300 Sobic001G111500--Sobic003G093300 Sobic010G042900 Sobic010G042900 Sobic001G111500--Sobic010G042900 Sobic004G297400 Sobic004G297400 Sobic001G111500--Sobic004G297400 Sobic009G235900 Sobic009G235900 Sobic001G111500--Sobic009G235900 Sobic001G111366--Sobic001G111500 Sobic001G111366--Sobic001G028700 Sobic001G111366--Sobic004G006300 Sobic001G111366--Sobic009G235900 Sobic001G111366--Sobic010G042900 Sobic001G111366--Sobic001G154100 Sobic004G256600 Sobic004G256600 Sobic001G111366--Sobic004G256600 Sobic001G111366--Sobic004G153400 Sobic010G001600 Sobic010G001600 Sobic001G111366--Sobic010G001600 Sobic001G028700--Sobic001G111366 Sobic001G028700--Sobic001G111500 Sobic001G028700--Sobic004G297400 Sobic001G028700--Sobic010G042900 Sobic001G028700--Sobic009G235900 Sobic001G028700--Sobic004G006300 Sobic004G034400 Sobic004G034400 Sobic001G028700--Sobic004G034400 Sobic006G209500 Sobic006G209500 Sobic001G028700--Sobic006G209500 Sobic009G027000 Sobic009G027000 Sobic001G028700--Sobic009G027000 Sobic007G026500 Sobic007G026500 Sobic001G154100--Sobic007G026500 Sobic009G135800 Sobic009G135800 Sobic001G154100--Sobic009G135800 Sobic001G154100--Sobic001G111500 Sobic001G154100--Sobic001G111366 Sobic001G154100--Sobic004G006300 Sobic002G340100 Sobic002G340100 Sobic001G154100--Sobic002G340100 Sobic003G145900 Sobic003G145900 Sobic001G154100--Sobic003G145900 Sobic009G178600 Sobic009G178600 Sobic001G154100--Sobic009G178600 Sobic002G417800 Sobic002G417800 Sobic001G154100--Sobic002G417800 Sobic004G153501 Sobic004G153501 Sobic004G153400--Sobic004G153501 Sobic002G046800 Sobic002G046800 Sobic004G153400--Sobic002G046800 Sobic004G153400--Sobic003G093300 Sobic004G153400--Sobic001G111500 Sobic001G123000 Sobic001G123000 Sobic004G153400--Sobic001G123000 Sobic002G226000 Sobic002G226000 Sobic004G153400--Sobic002G226000 Sobic004G153400--Sobic001G111366 Sobic007G148200 Sobic007G148200 Sobic004G153400--Sobic007G148200 Sobic004G153400--Sobic009G235900 Sobic004G006300--Sobic009G178600 Sobic009G117300 Sobic009G117300 Sobic004G006300--Sobic009G117300 Sobic006G254700 Sobic006G254700 Sobic004G006300--Sobic006G254700 Sobic004G006300--Sobic006G209500 Sobic004G348100 Sobic004G348100 Sobic004G006300--Sobic004G348100 Sobic001G428400 Sobic001G428400 Sobic004G006300--Sobic001G428400 Sobic009G117400 Sobic009G117400 Sobic004G006300--Sobic009G117400 Sobic004G006300--Sobic001G111366 Sobic004G006300--Sobic001G028700 Sobic003G093300--Sobic007G026500 Sobic009G121100 Sobic009G121100 Sobic003G093300--Sobic009G121100 Sobic004G295800 Sobic004G295800 Sobic003G093300--Sobic004G295800 Sobic008G191100 Sobic008G191100 Sobic003G093300--Sobic008G191100 Sobic003G093300--Sobic004G153400 Sobic006G138400 Sobic006G138400 Sobic003G093300--Sobic006G138400 Sobic006G214500 Sobic006G214500 Sobic003G093300--Sobic006G214500 Sobic001G373200 Sobic001G373200 Sobic003G093300--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic003G093300--Sobic003G407300 Sobic003G093600 Sobic003G093600 Sobic010G042900--Sobic003G093600 Sobic007G023700 Sobic007G023700 Sobic010G042900--Sobic007G023700 Sobic001G347600 Sobic001G347600 Sobic010G042900--Sobic001G347600 Sobic005G007800 Sobic005G007800 Sobic010G042900--Sobic005G007800 Sobic010G042900--Sobic004G034400 Sobic010G042900--Sobic001G028700 Sobic010G042900--Sobic009G235900 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700 Sobic004G297400--Sobic009G027000 Sobic004G297400--Sobic001G028700 Sobic006G122400 Sobic006G122400 Sobic004G297400--Sobic006G122400 Sobic010G078100 Sobic010G078100 Sobic004G297400--Sobic010G078100 Sobic004G297400--Sobic010G042900 Sobic008G160700 Sobic008G160700 Sobic004G297400--Sobic008G160700 Sobic004G297400--Sobic001G111366 Sobic007G002200 Sobic007G002200 Sobic004G297400--Sobic007G002200 Sobic004G297400--Sobic001G111500 Sobic001G194900 Sobic001G194900 Sobic009G235900--Sobic001G194900 Sobic002G188500 Sobic002G188500 Sobic009G235900--Sobic002G188500 Sobic009G235900--Sobic008G160700 Sobic001G359400 Sobic001G359400 Sobic009G235900--Sobic001G359400 Sobic009G235900--Sobic005G007800 Sobic009G235900--Sobic010G042900 Sobic003G005800 Sobic003G005800 Sobic009G235900--Sobic003G005800 Sobic009G235900--Sobic003G145900 Sobic009G235900--Sobic001G347600
Octagon: transcription factors


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