Gene annotation
Transcriptome id Sobic.001G111366.1
Synonym -
Functional annotation -
UniProt A0A1Z5S5J4
Pfam PF08446
Panther DB PTHR24423:SF519 PTHR24423
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT2G18790 : phytochrome B
RAP-DB (Rice) LOC_Os03g51030.2 : phytochrome A, putative, expressed
MaizeGDB (Corn) Zm00025a016932 , Zm00025a007919
Brachypodium KQK13495
Barley HORVU4Hr1G008610.3 , HORVU4Hr1G008610.2 , HORVU4Hr1G008610.1 , HORVU4Hr1G008610.7 , HORVU4Hr1G008610.6 , HORVU4Hr1G008610.5 , HORVU4Hr1G008610.4 , HORVU4Hr1G008610.8
Wheat TraesCS4A02G262900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G111500 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome A, putative, expressed K12120: phytochrome A
2 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
4 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
5 Sobic.010G042900 expressed protein -
6 Sobic.001G154100 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
7 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
8 Sobic.004G153400 OsFBK7 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
10 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
11 Sobic.010G199600 hydrolase, NUDIX family, domain containing protein, expressed -
12 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
13 Sobic.001G498200 YT521-B-like family domain containing protein, expressed -
14 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
15 Sobic.009G135800 CUE domain containing protein, expressed -
16 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
17 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
18 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
19 Sobic.003G093300 - -
20 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -


Gene co-expression network
sample Sobic001G111366 Sobic001G111366 Sobic001G111500 Sobic001G111500 Sobic001G111366--Sobic001G111500 Sobic001G028700 Sobic001G028700 Sobic001G111366--Sobic001G028700 Sobic004G006300 Sobic004G006300 Sobic001G111366--Sobic004G006300 Sobic009G235900 Sobic009G235900 Sobic001G111366--Sobic009G235900 Sobic010G042900 Sobic010G042900 Sobic001G111366--Sobic010G042900 Sobic001G154100 Sobic001G154100 Sobic001G111366--Sobic001G154100 Sobic004G256600 Sobic004G256600 Sobic001G111366--Sobic004G256600 Sobic004G153400 Sobic004G153400 Sobic001G111366--Sobic004G153400 Sobic010G001600 Sobic010G001600 Sobic001G111366--Sobic010G001600 Sobic001G111500--Sobic001G111366 Sobic001G111500--Sobic001G028700 Sobic001G111500--Sobic001G154100 Sobic001G111500--Sobic004G153400 Sobic001G111500--Sobic004G006300 Sobic003G093300 Sobic003G093300 Sobic001G111500--Sobic003G093300 Sobic001G111500--Sobic010G042900 Sobic004G297400 Sobic004G297400 Sobic001G111500--Sobic004G297400 Sobic001G111500--Sobic009G235900 Sobic001G028700--Sobic001G111366 Sobic001G028700--Sobic001G111500 Sobic001G028700--Sobic004G297400 Sobic001G028700--Sobic010G042900 Sobic001G028700--Sobic009G235900 Sobic001G028700--Sobic004G006300 Sobic004G034400 Sobic004G034400 Sobic001G028700--Sobic004G034400 Sobic006G209500 Sobic006G209500 Sobic001G028700--Sobic006G209500 Sobic009G027000 Sobic009G027000 Sobic001G028700--Sobic009G027000 Sobic009G178600 Sobic009G178600 Sobic004G006300--Sobic009G178600 Sobic009G117300 Sobic009G117300 Sobic004G006300--Sobic009G117300 Sobic006G254700 Sobic006G254700 Sobic004G006300--Sobic006G254700 Sobic004G006300--Sobic006G209500 Sobic004G348100 Sobic004G348100 Sobic004G006300--Sobic004G348100 Sobic001G428400 Sobic001G428400 Sobic004G006300--Sobic001G428400 Sobic009G117400 Sobic009G117400 Sobic004G006300--Sobic009G117400 Sobic004G006300--Sobic001G111366 Sobic004G006300--Sobic001G028700 Sobic001G194900 Sobic001G194900 Sobic009G235900--Sobic001G194900 Sobic002G188500 Sobic002G188500 Sobic009G235900--Sobic002G188500 Sobic008G160700 Sobic008G160700 Sobic009G235900--Sobic008G160700 Sobic001G359400 Sobic001G359400 Sobic009G235900--Sobic001G359400 Sobic005G007800 Sobic005G007800 Sobic009G235900--Sobic005G007800 Sobic009G235900--Sobic010G042900 Sobic003G005800 Sobic003G005800 Sobic009G235900--Sobic003G005800 Sobic003G145900 Sobic003G145900 Sobic009G235900--Sobic003G145900 Sobic001G347600 Sobic001G347600 Sobic009G235900--Sobic001G347600 Sobic003G093600 Sobic003G093600 Sobic010G042900--Sobic003G093600 Sobic007G023700 Sobic007G023700 Sobic010G042900--Sobic007G023700 Sobic010G042900--Sobic001G347600 Sobic010G042900--Sobic005G007800 Sobic010G042900--Sobic004G034400 Sobic010G042900--Sobic001G028700 Sobic010G042900--Sobic009G235900 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700 Sobic007G026500 Sobic007G026500 Sobic001G154100--Sobic007G026500 Sobic009G135800 Sobic009G135800 Sobic001G154100--Sobic009G135800 Sobic001G154100--Sobic001G111500 Sobic001G154100--Sobic001G111366 Sobic001G154100--Sobic004G006300 Sobic002G340100 Sobic002G340100 Sobic001G154100--Sobic002G340100 Sobic001G154100--Sobic003G145900 Sobic001G154100--Sobic009G178600 Sobic002G417800 Sobic002G417800 Sobic001G154100--Sobic002G417800 Sobic003G258400 Sobic003G258400 Sobic004G256600--Sobic003G258400 Sobic004G271900 Sobic004G271900 Sobic004G256600--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic004G256600--Sobic010G263800 Sobic009G040700 Sobic009G040700 Sobic004G256600--Sobic009G040700 Sobic005G187200 Sobic005G187200 Sobic004G256600--Sobic005G187200 Sobic006G009400 Sobic006G009400 Sobic004G256600--Sobic006G009400 Sobic009G231300 Sobic009G231300 Sobic004G256600--Sobic009G231300 Sobic004G256600--Sobic009G117400 Sobic002G077200 Sobic002G077200 Sobic004G256600--Sobic002G077200 Sobic004G153501 Sobic004G153501 Sobic004G153400--Sobic004G153501 Sobic002G046800 Sobic002G046800 Sobic004G153400--Sobic002G046800 Sobic004G153400--Sobic003G093300 Sobic004G153400--Sobic001G111500 Sobic001G123000 Sobic001G123000 Sobic004G153400--Sobic001G123000 Sobic002G226000 Sobic002G226000 Sobic004G153400--Sobic002G226000 Sobic004G153400--Sobic001G111366 Sobic007G148200 Sobic007G148200 Sobic004G153400--Sobic007G148200 Sobic004G153400--Sobic009G235900 Sobic010G001600--Sobic008G160700 Sobic006G124900 Sobic006G124900 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600
Octagon: transcription factors


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