Gene annotation
Transcriptome id Sobic.001G456800.2
Synonym Sb01g042910
Functional annotation nucleotide pyrophosphatase/phosphodiesterase, putative, expressed
UniProt C5WST2
Pfam PF16656 PF14008 PF00149
Panther DB PTHR22953 PTHR22953:SF20
NCBI CDD KOG1378; Purple acid phosphatase
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT1G13750 : Purple acid phosphatases superfamily protein
RAP-DB (Rice) LOC_Os03g11530.1 : nucleotide pyrophosphatase/phosphodiesterase, putative, expressed
MaizeGDB (Corn) Zm00025a053073
Brachypodium PNT68491 , KQK22903
Barley HORVU4Hr1G067950.22 , HORVU4Hr1G067950.23 , HORVU4Hr1G067950.20 , HORVU4Hr1G067950.21 , HORVU5Hr1G020400.3 , HORVU5Hr1G020400.2 , HORVU5Hr1G020400.9 , HORVU4Hr1G067950.9 , HORVU4Hr1G067950.8 , HORVU4Hr1G067950.3 , HORVU4Hr1G067950.2 , HORVU4Hr1G067950.1 , HORVU4Hr1G067950.7 , HORVU4Hr1G067950.6 , HORVU4Hr1G067950.5 , HORVU4Hr1G067950.4 , HORVU5Hr1G020400.5 , HORVU5Hr1G020400.4 , HORVU4Hr1G067950.24 , HORVU4Hr1G067950.25 , HORVU4Hr1G067950.19 , HORVU4Hr1G067950.18 , HORVU4Hr1G067950.13 , HORVU4Hr1G067950.12 , HORVU4Hr1G067950.11 , HORVU4Hr1G067950.10 , HORVU4Hr1G067950.17 , HORVU4Hr1G067950.16 , HORVU4Hr1G067950.15 , HORVU4Hr1G067950.14 , HORVU5Hr1G020400.11 , HORVU5Hr1G020400.10 , HORVU5Hr1G020400.13 , HORVU5Hr1G020400.12 , HORVU5Hr1G020400.15 , HORVU5Hr1G020400.14 , HORVU5Hr1G020400.17 , HORVU5Hr1G020400.16
Wheat TraesCS5B02G083000 , TraesCS4D02G246600 , TraesCS4B02G247300 , TraesCS4A02G057700 , TraesCS4A02G057700 , TraesCS5A02G082400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G456800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
2 Sobic.005G175000 glutathione S-transferase, N-terminal domain containing protein, expressed K00799: GST, glutathione S-transferase
3 Sobic.006G188500 uncharacterized mscS family protein, putative, expressed -
4 Sobic.008G024800 histidine triad family protein, putative, expressed K01522: bis(5'-adenosyl)-triphosphatase
5 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
6 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
7 Sobic.002G199400 growth regulator related protein, putative, expressed -
8 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
9 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin
10 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
11 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
12 Sobic.003G275800 expressed protein -
13 Sobic.009G057200 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
14 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
15 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
16 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
17 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
18 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
19 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
20 Sobic.010G176500 expressed protein -


Gene co-expression network
sample Sobic001G456800 Sobic001G456800 Sobic003G046300 Sobic003G046300 Sobic001G456800--Sobic003G046300 Sobic005G175000 Sobic005G175000 Sobic001G456800--Sobic005G175000 Sobic006G188500 Sobic006G188500 Sobic001G456800--Sobic006G188500 Sobic008G024800 Sobic008G024800 Sobic001G456800--Sobic008G024800 Sobic008G118500 Sobic008G118500 Sobic001G456800--Sobic008G118500 Sobic001G469200 Sobic001G469200 Sobic001G456800--Sobic001G469200 Sobic002G199400 Sobic002G199400 Sobic001G456800--Sobic002G199400 Sobic006G087100 Sobic006G087100 Sobic001G456800--Sobic006G087100 Sobic008G017200 Sobic008G017200 Sobic001G456800--Sobic008G017200 Sobic003G046300--Sobic006G188500 Sobic008G103300 Sobic008G103300 Sobic003G046300--Sobic008G103300 Sobic002G142900 Sobic002G142900 Sobic003G046300--Sobic002G142900 Sobic002G371700 Sobic002G371700 Sobic003G046300--Sobic002G371700 Sobic003G132000 Sobic003G132000 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100 Sobic005G175000--Sobic002G199400 Sobic005G175000--Sobic001G487100 Sobic001G506000 Sobic001G506000 Sobic005G175000--Sobic001G506000 Sobic005G175000--Sobic003G046300 Sobic005G175000--Sobic006G188500 Sobic005G175000--Sobic001G469200 Sobic001G408600 Sobic001G408600 Sobic005G175000--Sobic001G408600 Sobic005G175000--Sobic003G132000 Sobic005G175000--Sobic001G456800 Sobic006G188500--Sobic003G046300 Sobic006G188500--Sobic007G000200 Sobic009G003700 Sobic009G003700 Sobic006G188500--Sobic009G003700 Sobic009G234700 Sobic009G234700 Sobic006G188500--Sobic009G234700 Sobic001G488100 Sobic001G488100 Sobic006G188500--Sobic001G488100 Sobic006G188500--Sobic001G487100 Sobic006G188500--Sobic005G175000 Sobic004G006600 Sobic004G006600 Sobic006G188500--Sobic004G006600 Sobic001G462600 Sobic001G462600 Sobic006G188500--Sobic001G462600 Sobic008G024800--Sobic003G046300 Sobic010G176500 Sobic010G176500 Sobic008G024800--Sobic010G176500 Sobic010G228500 Sobic010G228500 Sobic008G024800--Sobic010G228500 Sobic008G024800--Sobic006G188500 Sobic008G024800--Sobic001G456800 Sobic010G266500 Sobic010G266500 Sobic008G024800--Sobic010G266500 Sobic006G010000 Sobic006G010000 Sobic008G024800--Sobic006G010000 Sobic005G172500 Sobic005G172500 Sobic008G024800--Sobic005G172500 Sobic001G244300 Sobic001G244300 Sobic008G024800--Sobic001G244300 Sobic001G178400 Sobic001G178400 Sobic008G118500--Sobic001G178400 Sobic008G118500--Sobic006G087100 Sobic009G102900 Sobic009G102900 Sobic008G118500--Sobic009G102900 Sobic009G002000 Sobic009G002000 Sobic008G118500--Sobic009G002000 Sobic010G220900 Sobic010G220900 Sobic008G118500--Sobic010G220900 Sobic008G118500--Sobic001G469200 Sobic001G291800 Sobic001G291800 Sobic008G118500--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic008G118500--Sobic009G258400 Sobic001G346300 Sobic001G346300 Sobic008G118500--Sobic001G346300 Sobic001G469200--Sobic002G199400 Sobic001G115500 Sobic001G115500 Sobic001G469200--Sobic001G115500 Sobic001G085800 Sobic001G085800 Sobic001G469200--Sobic001G085800 Sobic005G115500 Sobic005G115500 Sobic001G469200--Sobic005G115500 Sobic001G469200--Sobic003G132000 Sobic004G075200 Sobic004G075200 Sobic001G469200--Sobic004G075200 Sobic010G108900 Sobic010G108900 Sobic001G469200--Sobic010G108900 Sobic006G245700 Sobic006G245700 Sobic001G469200--Sobic006G245700 Sobic001G469200--Sobic001G487100 Sobic002G160700 Sobic002G160700 Sobic002G199400--Sobic002G160700 Sobic001G151600 Sobic001G151600 Sobic002G199400--Sobic001G151600 Sobic002G199400--Sobic001G469200 Sobic001G358500 Sobic001G358500 Sobic002G199400--Sobic001G358500 Sobic006G259900 Sobic006G259900 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic002G199400--Sobic005G175000 Sobic004G030400 Sobic004G030400 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic006G087100--Sobic010G220900 Sobic004G019600 Sobic004G019600 Sobic006G087100--Sobic004G019600 Sobic006G087100--Sobic001G346300 Sobic009G108500 Sobic009G108500 Sobic006G087100--Sobic009G108500 Sobic006G087100--Sobic008G118500 Sobic004G133700 Sobic004G133700 Sobic006G087100--Sobic004G133700 Sobic001G218800 Sobic001G218800 Sobic006G087100--Sobic001G218800 Sobic003G122000 Sobic003G122000 Sobic006G087100--Sobic003G122000 Sobic002G359900 Sobic002G359900 Sobic006G087100--Sobic002G359900 Sobic006G157000 Sobic006G157000 Sobic008G017200--Sobic006G157000 Sobic001G008500 Sobic001G008500 Sobic008G017200--Sobic001G008500 Sobic009G071700 Sobic009G071700 Sobic008G017200--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic008G017200--Sobic010G188000 Sobic008G017200--Sobic006G010000 Sobic004G047200 Sobic004G047200 Sobic008G017200--Sobic004G047200 Sobic009G045900 Sobic009G045900 Sobic008G017200--Sobic009G045900 Sobic002G365900 Sobic002G365900 Sobic008G017200--Sobic002G365900 Sobic006G251600 Sobic006G251600 Sobic008G017200--Sobic006G251600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.