Gene annotation
Transcriptome id Sobic.009G235300.1
Synonym Sb09g028800
Functional annotation hhH-GPD superfamily base excision DNA repair protein, putative, expressed
UniProt C5YVX2
Pfam PF00730
Panther DB PTHR10242 PTHR10242:SF6
NCBI CDD KOG1918; 3-methyladenine DNA glycosidase
KEGG Orthology K01247; DNA-3-methyladenine glycosylase II
Gene Ontology GO:0006284; base-excision repair


Orthologs (automatic annotation)
TAIR AT3G50880 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os05g49250.1 : hhH-GPD superfamily base excision DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a044606
Brachypodium KQK04812
Barley HORVU1Hr1G089550.10 , HORVU1Hr1G089550.11 , HORVU1Hr1G089550.12 , HORVU1Hr1G089550.13 , HORVU1Hr1G089550.6 , HORVU1Hr1G089550.7 , HORVU1Hr1G089550.4 , HORVU1Hr1G089550.5 , HORVU1Hr1G089550.2 , HORVU1Hr1G089550.3 , HORVU1Hr1G089550.1 , HORVU1Hr1G089550.8 , HORVU1Hr1G089550.9
Wheat -
Populus -


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cDNA sequences
Sobic.009G235300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G097400 thiol-disulphide oxidoreductase DCC, putative, expressed -
2 Sobic.003G128500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
3 Sobic.009G088401 - -
4 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.006G177100 expressed protein K03671: thioredoxin 1
6 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
7 Sobic.003G390300 expressed protein -
8 Sobic.004G109500 - -
9 Sobic.001G062700 GATA zinc finger domain containing protein, expressed -
10 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
11 Sobic.007G076800 B3 DNA binding domain containing protein, expressed -
12 Sobic.007G206700 lectin-like protein kinase, putative, expressed -
13 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.001G029900 protein kinase domain containing protein, expressed -
15 Sobic.002G366700 expressed protein -
16 Sobic.004G107400 expressed protein -
17 Sobic.007G016000 - -
18 Sobic.002G001300 laccase precursor protein, putative, expressed K05909: laccase
19 Sobic.005G098200 TKL_IRAK_CR4L.7 - The CR4L subfamily has homology with Crinkly4, expressed -
20 Sobic.001G402701 - -


Gene co-expression network
sample Sobic009G235300 Sobic009G235300 Sobic010G097400 Sobic010G097400 Sobic009G235300--Sobic010G097400 Sobic003G128500 Sobic003G128500 Sobic009G235300--Sobic003G128500 Sobic009G088401 Sobic009G088401 Sobic009G235300--Sobic009G088401 Sobic003G377200 Sobic003G377200 Sobic009G235300--Sobic003G377200 Sobic006G177100 Sobic006G177100 Sobic009G235300--Sobic006G177100 Sobic003G284500 Sobic003G284500 Sobic009G235300--Sobic003G284500 Sobic003G390300 Sobic003G390300 Sobic009G235300--Sobic003G390300 Sobic004G109500 Sobic004G109500 Sobic009G235300--Sobic004G109500 Sobic001G062700 Sobic001G062700 Sobic009G235300--Sobic001G062700 Sobic010G097400--Sobic006G177100 Sobic010G097400--Sobic009G235300 Sobic010G097400--Sobic004G109500 Sobic002G366700 Sobic002G366700 Sobic010G097400--Sobic002G366700 Sobic010G097400--Sobic003G284500 Sobic010G097400--Sobic003G128500 Sobic010G097400--Sobic003G377200 Sobic001G150800 Sobic001G150800 Sobic010G097400--Sobic001G150800 Sobic004G180600 Sobic004G180600 Sobic010G097400--Sobic004G180600 Sobic003G128500--Sobic003G284500 Sobic010G267650 Sobic010G267650 Sobic003G128500--Sobic010G267650 Sobic003G359200 Sobic003G359200 Sobic003G128500--Sobic003G359200 Sobic003G128500--Sobic010G097400 Sobic009G050100 Sobic009G050100 Sobic003G128500--Sobic009G050100 Sobic010G040200 Sobic010G040200 Sobic003G128500--Sobic010G040200 Sobic003G128500--Sobic003G377200 Sobic003G148500 Sobic003G148500 Sobic003G128500--Sobic003G148500 Sobic003G128500--Sobic009G235300 Sobic008G023000 Sobic008G023000 Sobic009G088401--Sobic008G023000 Sobic005G209800 Sobic005G209800 Sobic009G088401--Sobic005G209800 Sobic006G171000 Sobic006G171000 Sobic009G088401--Sobic006G171000 Sobic008G002100 Sobic008G002100 Sobic009G088401--Sobic008G002100 Sobic003G173032 Sobic003G173032 Sobic009G088401--Sobic003G173032 Sobic001G527400 Sobic001G527400 Sobic009G088401--Sobic001G527400 Sobic007G072400 Sobic007G072400 Sobic009G088401--Sobic007G072400 Sobic004G226300 Sobic004G226300 Sobic009G088401--Sobic004G226300 Sobic007G183000 Sobic007G183000 Sobic009G088401--Sobic007G183000 Sobic001G267500 Sobic001G267500 Sobic003G377200--Sobic001G267500 Sobic007G208500 Sobic007G208500 Sobic003G377200--Sobic007G208500 Sobic006G186200 Sobic006G186200 Sobic003G377200--Sobic006G186200 Sobic006G163650 Sobic006G163650 Sobic003G377200--Sobic006G163650 Sobic003G377200--Sobic004G180600 Sobic003G377200--Sobic003G390300 Sobic009G203400 Sobic009G203400 Sobic003G377200--Sobic009G203400 Sobic005G076650 Sobic005G076650 Sobic003G377200--Sobic005G076650 Sobic004G156600 Sobic004G156600 Sobic003G377200--Sobic004G156600 Sobic006G177100--Sobic010G097400 Sobic002G339400 Sobic002G339400 Sobic006G177100--Sobic002G339400 Sobic004G288400 Sobic004G288400 Sobic006G177100--Sobic004G288400 Sobic006G177100--Sobic002G366700 Sobic010G014300 Sobic010G014300 Sobic006G177100--Sobic010G014300 Sobic006G177100--Sobic009G050100 Sobic001G494150 Sobic001G494150 Sobic006G177100--Sobic001G494150 Sobic006G177100--Sobic003G284500 Sobic006G258400 Sobic006G258400 Sobic006G177100--Sobic006G258400 Sobic003G284500--Sobic003G128500 Sobic003G284500--Sobic007G072400 Sobic003G284500--Sobic004G109500 Sobic003G284500--Sobic009G088401 Sobic003G284500--Sobic009G050100 Sobic002G173600 Sobic002G173600 Sobic003G284500--Sobic002G173600 Sobic004G107400 Sobic004G107400 Sobic003G284500--Sobic004G107400 Sobic003G284500--Sobic003G390300 Sobic010G152700 Sobic010G152700 Sobic003G284500--Sobic010G152700 Sobic003G390300--Sobic004G107400 Sobic004G061600 Sobic004G061600 Sobic003G390300--Sobic004G061600 Sobic008G136900 Sobic008G136900 Sobic003G390300--Sobic008G136900 Sobic003G390300--Sobic001G062700 Sobic003G104900 Sobic003G104900 Sobic003G390300--Sobic003G104900 Sobic010G014900 Sobic010G014900 Sobic003G390300--Sobic010G014900 Sobic007G158400 Sobic007G158400 Sobic003G390300--Sobic007G158400 Sobic001G137200 Sobic001G137200 Sobic003G390300--Sobic001G137200 Sobic009G028600 Sobic009G028600 Sobic003G390300--Sobic009G028600 Sobic004G109500--Sobic009G088401 Sobic004G109500--Sobic007G072400 Sobic004G109500--Sobic004G180600 Sobic004G043200 Sobic004G043200 Sobic004G109500--Sobic004G043200 Sobic007G016000 Sobic007G016000 Sobic004G109500--Sobic007G016000 Sobic004G109500--Sobic007G158400 Sobic004G109500--Sobic005G076650 Sobic004G109500--Sobic004G061600 Sobic004G109500--Sobic004G107400 Sobic001G062700--Sobic003G390300 Sobic001G062700--Sobic004G061600 Sobic001G062700--Sobic008G136900 Sobic007G092300 Sobic007G092300 Sobic001G062700--Sobic007G092300 Sobic010G119600 Sobic010G119600 Sobic001G062700--Sobic010G119600 Sobic010G259200 Sobic010G259200 Sobic001G062700--Sobic010G259200 Sobic007G206700 Sobic007G206700 Sobic001G062700--Sobic007G206700 Sobic001G062700--Sobic010G014900 Sobic001G062700--Sobic004G107400
Octagon: transcription factors


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