Gene annotation
Transcriptome id Sobic.009G243900.1
Synonym Sb09g029530
Functional annotation hhH-GPD superfamily base excision DNA repair protein, putative, expressed
UniProt C5YWE3
Pfam PF00730
Panther DB PTHR10242 PTHR10242:SF0
NCBI CDD KOG1918; 3-methyladenine DNA glycosidase
KEGG Orthology K01247; DNA-3-methyladenine glycosylase II
Gene Ontology GO:0006284; base-excision repair


Orthologs (automatic annotation)
TAIR AT1G19480 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os05g50290.1 : hhH-GPD superfamily base excision DNA repair protein, putative, expressed
MaizeGDB (Corn) Zm00025a058219 , Zm00025a036696 , Zm00025a044688
Brachypodium KQK04812 , KQK04652
Barley HORVU1Hr1G091490.1 , HORVU1Hr1G089550.10 , HORVU1Hr1G089550.11 , HORVU1Hr1G089550.12 , HORVU1Hr1G089550.13 , HORVU1Hr1G089550.6 , HORVU1Hr1G089550.7 , HORVU1Hr1G089550.4 , HORVU1Hr1G089550.5 , HORVU1Hr1G089550.2 , HORVU1Hr1G089550.3 , HORVU1Hr1G089550.1 , HORVU1Hr1G089550.8 , HORVU1Hr1G089550.9
Wheat -
Populus -


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cDNA sequences
Sobic.009G243900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G274200 5-nucleotidase surE, putative, expressed K03787: 5'-nucleotidase
2 Sobic.003G167000 protein phosphotase protein, putative, expressed -
3 Sobic.006G153200 OsClp7 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
5 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
6 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
8 Sobic.004G172600 tetratricopeptide repeat containing protein, putative, expressed -
9 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
10 Sobic.004G017900 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
11 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
12 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
13 Sobic.002G070300 expressed protein -
14 Sobic.004G100100 expressed protein -
15 Sobic.001G110300 fb27, putative, expressed -
16 Sobic.002G345000 expressed protein -
17 Sobic.003G028200 expressed protein -
18 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
19 Sobic.007G003100 transmembrane protein 18, putative, expressed -
20 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic009G243900 Sobic009G243900 Sobic003G274200 Sobic003G274200 Sobic009G243900--Sobic003G274200 Sobic003G167000 Sobic003G167000 Sobic009G243900--Sobic003G167000 Sobic006G153200 Sobic006G153200 Sobic009G243900--Sobic006G153200 Sobic002G217500 Sobic002G217500 Sobic009G243900--Sobic002G217500 Sobic003G260600 Sobic003G260600 Sobic009G243900--Sobic003G260600 Sobic008G132200 Sobic008G132200 Sobic009G243900--Sobic008G132200 Sobic001G543400 Sobic001G543400 Sobic009G243900--Sobic001G543400 Sobic004G172600 Sobic004G172600 Sobic009G243900--Sobic004G172600 Sobic002G420600 Sobic002G420600 Sobic009G243900--Sobic002G420600 Sobic003G089100 Sobic003G089100 Sobic003G274200--Sobic003G089100 Sobic003G129900 Sobic003G129900 Sobic003G274200--Sobic003G129900 Sobic002G228900 Sobic002G228900 Sobic003G274200--Sobic002G228900 Sobic003G274200--Sobic003G260600 Sobic003G274200--Sobic002G420600 Sobic001G387200 Sobic001G387200 Sobic003G274200--Sobic001G387200 Sobic003G274200--Sobic003G167000 Sobic002G255400 Sobic002G255400 Sobic003G274200--Sobic002G255400 Sobic007G014700 Sobic007G014700 Sobic003G274200--Sobic007G014700 Sobic007G048700 Sobic007G048700 Sobic003G167000--Sobic007G048700 Sobic001G347700 Sobic001G347700 Sobic003G167000--Sobic001G347700 Sobic001G013200 Sobic001G013200 Sobic003G167000--Sobic001G013200 Sobic007G003100 Sobic007G003100 Sobic003G167000--Sobic007G003100 Sobic009G218000 Sobic009G218000 Sobic003G167000--Sobic009G218000 Sobic003G167000--Sobic003G274200 Sobic003G113400 Sobic003G113400 Sobic003G167000--Sobic003G113400 Sobic003G190600 Sobic003G190600 Sobic003G167000--Sobic003G190600 Sobic003G167000--Sobic006G153200 Sobic006G153200--Sobic009G218000 Sobic006G153200--Sobic002G217500 Sobic004G100100 Sobic004G100100 Sobic006G153200--Sobic004G100100 Sobic003G075200 Sobic003G075200 Sobic006G153200--Sobic003G075200 Sobic006G153200--Sobic003G167000 Sobic009G107200 Sobic009G107200 Sobic006G153200--Sobic009G107200 Sobic006G153200--Sobic003G113400 Sobic006G153200--Sobic003G260600 Sobic008G011800 Sobic008G011800 Sobic006G153200--Sobic008G011800 Sobic003G016300 Sobic003G016300 Sobic002G217500--Sobic003G016300 Sobic002G352200 Sobic002G352200 Sobic002G217500--Sobic002G352200 Sobic002G217500--Sobic002G255400 Sobic002G217500--Sobic006G153200 Sobic001G219800 Sobic001G219800 Sobic002G217500--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic002G217500--Sobic008G018300 Sobic002G217500--Sobic003G260600 Sobic007G023400 Sobic007G023400 Sobic002G217500--Sobic007G023400 Sobic002G217500--Sobic009G218000 Sobic003G260600--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700 Sobic002G070300 Sobic002G070300 Sobic008G132200--Sobic002G070300 Sobic008G132200--Sobic003G260600 Sobic008G132200--Sobic002G255400 Sobic008G132200--Sobic003G372200 Sobic001G385000 Sobic001G385000 Sobic008G132200--Sobic001G385000 Sobic002G167100 Sobic002G167100 Sobic008G132200--Sobic002G167100 Sobic008G132200--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic008G132200--Sobic006G232800 Sobic010G253200 Sobic010G253200 Sobic008G132200--Sobic010G253200 Sobic002G153000 Sobic002G153000 Sobic001G543400--Sobic002G153000 Sobic001G543400--Sobic002G070300 Sobic008G057900 Sobic008G057900 Sobic001G543400--Sobic008G057900 Sobic001G543400--Sobic003G260600 Sobic004G017900 Sobic004G017900 Sobic001G543400--Sobic004G017900 Sobic001G543400--Sobic007G014700 Sobic004G218600 Sobic004G218600 Sobic001G543400--Sobic004G218600 Sobic004G261800 Sobic004G261800 Sobic001G543400--Sobic004G261800 Sobic001G543400--Sobic008G132200 Sobic003G054100 Sobic003G054100 Sobic004G172600--Sobic003G054100 Sobic009G228300 Sobic009G228300 Sobic004G172600--Sobic009G228300 Sobic005G034600 Sobic005G034600 Sobic004G172600--Sobic005G034600 Sobic001G072900 Sobic001G072900 Sobic004G172600--Sobic001G072900 Sobic004G172600--Sobic009G243900 Sobic001G171500 Sobic001G171500 Sobic004G172600--Sobic001G171500 Sobic001G487000 Sobic001G487000 Sobic004G172600--Sobic001G487000 Sobic001G513100 Sobic001G513100 Sobic004G172600--Sobic001G513100 Sobic001G150800 Sobic001G150800 Sobic004G172600--Sobic001G150800 Sobic002G420600--Sobic003G089100 Sobic004G173700 Sobic004G173700 Sobic002G420600--Sobic004G173700 Sobic006G120900 Sobic006G120900 Sobic002G420600--Sobic006G120900 Sobic002G420600--Sobic003G201500 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic001G303900 Sobic001G303900 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic002G420600--Sobic003G372200
Octagon: transcription factors


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