Gene annotation
Transcriptome id Sobic.001G513100.1
Synonym EMB1793, Sb01g047880
Functional annotation LYR motif containing protein, putative, expressed
UniProt Q1KSA7
Pfam PF05347
Panther DB PTHR13166 PTHR13166:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76060 : LYR family of Fe/S cluster biogenesis protein
RAP-DB (Rice) LOC_Os03g04380.1 : LYR motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000499
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G366700 expressed protein -
2 Sobic.003G008300 thioesterase family protein, putative, expressed K17362: acyl-coenzyme A thioesterase 13
3 Sobic.002G058600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsFBX237 - F-box domain containing protein, expressed -
4 Sobic.002G339400 expressed protein -
5 Sobic.001G494150 - -
6 Sobic.010G087200 expressed protein -
7 Sobic.001G428700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.003G118900 disease resistance protein RGA2, putative, expressed -
9 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
10 Sobic.010G097400 thiol-disulphide oxidoreductase DCC, putative, expressed -
11 Sobic.006G144800 expressed protein -
12 Sobic.002G287500 RNA recognition motif containing protein, expressed K13154: U11/U12 small nuclear ribonucleoprotein 31 kDa protein
13 Sobic.002G038400 expressed protein -
14 Sobic.006G258400 OsFBX153 - F-box domain containing protein, expressed -
15 Sobic.004G109500 - -
16 Sobic.001G013600 expressed protein -
17 Sobic.009G088401 - -
18 Sobic.004G210101 - -
19 Sobic.006G075700 expressed protein -
20 Sobic.002G001300 laccase precursor protein, putative, expressed K05909: laccase


Gene co-expression network
sample Sobic001G513100 Sobic001G513100 Sobic002G366700 Sobic002G366700 Sobic001G513100--Sobic002G366700 Sobic003G008300 Sobic003G008300 Sobic001G513100--Sobic003G008300 Sobic002G058600 Sobic002G058600 Sobic001G513100--Sobic002G058600 Sobic002G339400 Sobic002G339400 Sobic001G513100--Sobic002G339400 Sobic001G494150 Sobic001G494150 Sobic001G513100--Sobic001G494150 Sobic010G087200 Sobic010G087200 Sobic001G513100--Sobic010G087200 Sobic001G428700 Sobic001G428700 Sobic001G513100--Sobic001G428700 Sobic003G118900 Sobic003G118900 Sobic001G513100--Sobic003G118900 Sobic004G180600 Sobic004G180600 Sobic001G513100--Sobic004G180600 Sobic002G366700--Sobic001G494150 Sobic002G366700--Sobic002G339400 Sobic002G366700--Sobic010G087200 Sobic006G075700 Sobic006G075700 Sobic002G366700--Sobic006G075700 Sobic002G366700--Sobic002G058600 Sobic002G366700--Sobic001G513100 Sobic010G259200 Sobic010G259200 Sobic002G366700--Sobic010G259200 Sobic010G119600 Sobic010G119600 Sobic002G366700--Sobic010G119600 Sobic002G366700--Sobic001G428700 Sobic003G008300--Sobic001G513100 Sobic003G008300--Sobic002G058600 Sobic003G008300--Sobic002G366700 Sobic003G008300--Sobic003G118900 Sobic002G349300 Sobic002G349300 Sobic003G008300--Sobic002G349300 Sobic002G046700 Sobic002G046700 Sobic003G008300--Sobic002G046700 Sobic003G008300--Sobic002G339400 Sobic010G099600 Sobic010G099600 Sobic003G008300--Sobic010G099600 Sobic007G038900 Sobic007G038900 Sobic003G008300--Sobic007G038900 Sobic002G058600--Sobic002G366700 Sobic002G058600--Sobic007G038900 Sobic002G058600--Sobic001G513100 Sobic002G287500 Sobic002G287500 Sobic002G058600--Sobic002G287500 Sobic002G058600--Sobic001G494150 Sobic006G278600 Sobic006G278600 Sobic002G058600--Sobic006G278600 Sobic002G058600--Sobic010G087200 Sobic009G236500 Sobic009G236500 Sobic002G058600--Sobic009G236500 Sobic002G058600--Sobic003G008300 Sobic002G339400--Sobic002G366700 Sobic002G339400--Sobic001G494150 Sobic002G339400--Sobic010G087200 Sobic002G339400--Sobic001G428700 Sobic004G288400 Sobic004G288400 Sobic002G339400--Sobic004G288400 Sobic010G014300 Sobic010G014300 Sobic002G339400--Sobic010G014300 Sobic002G339400--Sobic006G075700 Sobic006G166700 Sobic006G166700 Sobic002G339400--Sobic006G166700 Sobic002G339400--Sobic010G259200 Sobic001G494150--Sobic006G075700 Sobic001G494150--Sobic010G259200 Sobic001G494150--Sobic010G119600 Sobic001G494150--Sobic009G236500 Sobic002G001300 Sobic002G001300 Sobic001G494150--Sobic002G001300 Sobic001G494150--Sobic002G366700 Sobic010G002850 Sobic010G002850 Sobic001G494150--Sobic010G002850 Sobic001G494150--Sobic010G087200 Sobic005G156700 Sobic005G156700 Sobic001G494150--Sobic005G156700 Sobic010G087200--Sobic002G001300 Sobic010G087200--Sobic010G259200 Sobic007G206700 Sobic007G206700 Sobic010G087200--Sobic007G206700 Sobic010G087200--Sobic001G428700 Sobic010G087200--Sobic010G014300 Sobic010G087200--Sobic001G494150 Sobic010G087200--Sobic006G166700 Sobic010G087200--Sobic010G119600 Sobic010G087200--Sobic002G366700 Sobic001G428700--Sobic010G087200 Sobic001G428700--Sobic001G494150 Sobic001G428700--Sobic002G339400 Sobic001G428700--Sobic010G014300 Sobic001G428700--Sobic002G001300 Sobic001G428700--Sobic006G166700 Sobic001G428700--Sobic002G366700 Sobic001G428700--Sobic010G259200 Sobic002G348900 Sobic002G348900 Sobic001G428700--Sobic002G348900 Sobic003G118900--Sobic003G008300 Sobic007G131800 Sobic007G131800 Sobic003G118900--Sobic007G131800 Sobic003G118900--Sobic001G513100 Sobic003G118900--Sobic006G166700 Sobic003G118900--Sobic010G087200 Sobic001G020500 Sobic001G020500 Sobic003G118900--Sobic001G020500 Sobic003G118900--Sobic002G001300 Sobic003G118900--Sobic002G366700 Sobic003G118900--Sobic002G339400 Sobic006G273500 Sobic006G273500 Sobic004G180600--Sobic006G273500 Sobic008G098098 Sobic008G098098 Sobic004G180600--Sobic008G098098 Sobic009G088401 Sobic009G088401 Sobic004G180600--Sobic009G088401 Sobic007G016000 Sobic007G016000 Sobic004G180600--Sobic007G016000 Sobic008G119200 Sobic008G119200 Sobic004G180600--Sobic008G119200 Sobic004G107400 Sobic004G107400 Sobic004G180600--Sobic004G107400 Sobic003G407500 Sobic003G407500 Sobic004G180600--Sobic003G407500 Sobic007G072400 Sobic007G072400 Sobic004G180600--Sobic007G072400 Sobic005G209800 Sobic005G209800 Sobic004G180600--Sobic005G209800
Octagon: transcription factors


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