Gene annotation
Transcriptome id Sobic.002G030400.1
Synonym FRS4, Sb02g002703
Functional annotation SWIM zinc finger family protein, putative, expressed
UniProt A0A1B6Q8X1
Pfam PF04434 PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G76320 : FAR1-related sequence 4
RAP-DB (Rice) LOC_Os11g45530.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G380700 bZIP transcription factor family protein, putative, expressed -
2 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
3 Sobic.002G239400 OsFBX338 - F-box domain containing protein, expressed -
4 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
5 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
6 Sobic.002G313100 STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08838: serine/threonine-protein kinase 24/25/MST4
7 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
8 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
9 Sobic.004G213400 ATP8, putative, expressed -
10 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
11 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
12 Sobic.002G299500 expressed protein -
13 Sobic.006G189000 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
14 Sobic.007G144100 eukaryotic translation initiation factor 3 subunit C, putative, expressed K03252: translation initiation factor 3 subunit C
15 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
16 Sobic.009G220700 - -
17 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
18 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
19 Sobic.003G293100 GATA zinc finger domain containing protein, expressed -
20 Sobic.005G060100 growth regulator related protein, putative, expressed -


Gene co-expression network
sample Sobic002G030400 Sobic002G030400 Sobic001G380700 Sobic001G380700 Sobic002G030400--Sobic001G380700 Sobic001G131900 Sobic001G131900 Sobic002G030400--Sobic001G131900 Sobic002G239400 Sobic002G239400 Sobic002G030400--Sobic002G239400 Sobic003G352900 Sobic003G352900 Sobic002G030400--Sobic003G352900 Sobic003G293400 Sobic003G293400 Sobic002G030400--Sobic003G293400 Sobic002G313100 Sobic002G313100 Sobic002G030400--Sobic002G313100 Sobic004G298600 Sobic004G298600 Sobic002G030400--Sobic004G298600 Sobic003G376900 Sobic003G376900 Sobic002G030400--Sobic003G376900 Sobic004G213400 Sobic004G213400 Sobic002G030400--Sobic004G213400 Sobic001G385300 Sobic001G385300 Sobic001G380700--Sobic001G385300 Sobic001G380700--Sobic001G131900 Sobic001G380700--Sobic004G298600 Sobic009G214500 Sobic009G214500 Sobic001G380700--Sobic009G214500 Sobic007G105700 Sobic007G105700 Sobic001G380700--Sobic007G105700 Sobic001G433600 Sobic001G433600 Sobic001G380700--Sobic001G433600 Sobic006G189000 Sobic006G189000 Sobic001G380700--Sobic006G189000 Sobic001G380700--Sobic003G376900 Sobic001G380700--Sobic003G293400 Sobic001G131900--Sobic003G293400 Sobic001G131900--Sobic003G352900 Sobic004G038400 Sobic004G038400 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G131900--Sobic001G385300 Sobic005G045800 Sobic005G045800 Sobic001G131900--Sobic005G045800 Sobic001G131900--Sobic004G298600 Sobic002G420100 Sobic002G420100 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic002G239400--Sobic004G213400 Sobic002G348400 Sobic002G348400 Sobic002G239400--Sobic002G348400 Sobic002G239400--Sobic001G131900 Sobic001G117900 Sobic001G117900 Sobic002G239400--Sobic001G117900 Sobic002G392400 Sobic002G392400 Sobic002G239400--Sobic002G392400 Sobic002G239400--Sobic003G293400 Sobic002G239400--Sobic007G105700 Sobic009G054400 Sobic009G054400 Sobic002G239400--Sobic009G054400 Sobic005G048600 Sobic005G048600 Sobic002G239400--Sobic005G048600 Sobic003G352900--Sobic007G144100 Sobic002G299500 Sobic002G299500 Sobic003G352900--Sobic002G299500 Sobic003G352900--Sobic001G076600 Sobic003G352900--Sobic003G376900 Sobic009G201000 Sobic009G201000 Sobic003G352900--Sobic009G201000 Sobic003G352900--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G352900--Sobic009G163100 Sobic003G352900--Sobic001G385300 Sobic008G007600 Sobic008G007600 Sobic003G352900--Sobic008G007600 Sobic003G293400--Sobic001G131900 Sobic003G293400--Sobic003G352900 Sobic004G198300 Sobic004G198300 Sobic003G293400--Sobic004G198300 Sobic003G293400--Sobic001G076600 Sobic003G293400--Sobic002G420100 Sobic003G293400--Sobic004G038400 Sobic004G026600 Sobic004G026600 Sobic003G293400--Sobic004G026600 Sobic003G293400--Sobic004G298600 Sobic003G293400--Sobic007G144100 Sobic002G313100--Sobic002G392400 Sobic006G232800 Sobic006G232800 Sobic002G313100--Sobic006G232800 Sobic002G313100--Sobic007G105700 Sobic003G004800 Sobic003G004800 Sobic002G313100--Sobic003G004800 Sobic007G086600 Sobic007G086600 Sobic002G313100--Sobic007G086600 Sobic002G313100--Sobic003G293400 Sobic005G087300 Sobic005G087300 Sobic002G313100--Sobic005G087300 Sobic001G280500 Sobic001G280500 Sobic002G313100--Sobic001G280500 Sobic002G313100--Sobic001G076600 Sobic004G298600--Sobic001G385300 Sobic004G298600--Sobic001G131900 Sobic004G298600--Sobic003G293400 Sobic004G298600--Sobic004G026600 Sobic005G060100 Sobic005G060100 Sobic004G298600--Sobic005G060100 Sobic001G308500 Sobic001G308500 Sobic004G298600--Sobic001G308500 Sobic004G298600--Sobic001G433600 Sobic004G298600--Sobic007G105700 Sobic004G298600--Sobic003G352900 Sobic003G376900--Sobic002G299500 Sobic003G376900--Sobic009G163100 Sobic003G376900--Sobic003G352900 Sobic008G171900 Sobic008G171900 Sobic003G376900--Sobic008G171900 Sobic003G376900--Sobic001G385300 Sobic005G020600 Sobic005G020600 Sobic003G376900--Sobic005G020600 Sobic001G435700 Sobic001G435700 Sobic003G376900--Sobic001G435700 Sobic003G376900--Sobic005G045800 Sobic001G072000 Sobic001G072000 Sobic003G376900--Sobic001G072000 Sobic004G213400--Sobic002G239400 Sobic005G110547 Sobic005G110547 Sobic004G213400--Sobic005G110547 Sobic004G213400--Sobic004G298600 Sobic004G213400--Sobic003G293400 Sobic001G248400 Sobic001G248400 Sobic004G213400--Sobic001G248400 Sobic004G213400--Sobic001G131900 Sobic009G220700 Sobic009G220700 Sobic004G213400--Sobic009G220700 Sobic002G308000 Sobic002G308000 Sobic004G213400--Sobic002G308000 Sobic004G213400--Sobic007G105700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.