Gene annotation
Transcriptome id Sobic.003G293100.1
Synonym Sb03g034360, GATA12
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt C5XK12
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF170
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G25830 : GATA transcription factor 12
RAP-DB (Rice) LOC_Os01g54210.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020948 , Zm00025a040057 , Zm00025a044324 , Zm00025a037972
Brachypodium KQK23690 , KQK09702 , KQK24170
Barley HORVU3Hr1G071030.4 , HORVU3Hr1G071030.5 , HORVU3Hr1G071030.7 , HORVU3Hr1G071030.1 , HORVU3Hr1G071030.2 , HORVU3Hr1G071030.3 , HORVU3Hr1G071030.8 , HORVU1Hr1G076000.6 , HORVU1Hr1G076000.4 , HORVU1Hr1G076000.5 , HORVU1Hr1G076000.2 , HORVU1Hr1G076000.3 , HORVU1Hr1G076000.1 , HORVU1Hr1G056280.2 , HORVU1Hr1G056280.1 , HORVU4Hr1G088280.8 , HORVU4Hr1G088280.1 , HORVU4Hr1G088280.2 , HORVU4Hr1G088280.3 , HORVU4Hr1G088280.4
Wheat TraesCS1D02G343000 , TraesCS3A02G274900 , TraesCS4D02G362800 , TraesCS3D02G274600 , TraesCS5A02G538600 , TraesCS1A02G340900 , TraesCS1B02G353700 , TraesCS4B02G374400 , TraesCS3B02G308500
Populus -


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cDNA sequences
Sobic.003G293100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G128350 - -
2 Sobic.010G073900 expressed protein -
3 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
4 Sobic.003G407700 dnaJ domain containing protein, expressed -
5 Sobic.009G098700 basic helix-loop-helix domain containing protein, expressed -
6 Sobic.010G005100 ethylene-responsive element-binding protein, putative, expressed -
7 Sobic.001G432200 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
8 Sobic.009G238650 - -
9 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
10 Sobic.010G010201 - -
11 Sobic.001G165901 - -
12 Sobic.006G239500 plant protein of unknown function domain containing protein, expressed -
13 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
14 Sobic.004G349600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
15 Sobic.005G120400 CBS domain-containing protein, putative, expressed -
16 Sobic.007G048101 - -
17 Sobic.002G199800 - -
18 Sobic.003G005700 AGC_PVPK_like_kin82y.4 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
19 Sobic.002G088600 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
20 Sobic.003G093100 cyclin-related protein, putative, expressed -


Gene co-expression network
sample Sobic003G293100 Sobic003G293100 Sobic010G128350 Sobic010G128350 Sobic003G293100--Sobic010G128350 Sobic010G073900 Sobic010G073900 Sobic003G293100--Sobic010G073900 Sobic001G322400 Sobic001G322400 Sobic003G293100--Sobic001G322400 Sobic003G407700 Sobic003G407700 Sobic003G293100--Sobic003G407700 Sobic009G098700 Sobic009G098700 Sobic003G293100--Sobic009G098700 Sobic010G005100 Sobic010G005100 Sobic003G293100--Sobic010G005100 Sobic001G432200 Sobic001G432200 Sobic003G293100--Sobic001G432200 Sobic009G238650 Sobic009G238650 Sobic003G293100--Sobic009G238650 Sobic001G072000 Sobic001G072000 Sobic003G293100--Sobic001G072000 Sobic010G010201 Sobic010G010201 Sobic010G128350--Sobic010G010201 Sobic010G128350--Sobic009G238650 Sobic006G239500 Sobic006G239500 Sobic010G128350--Sobic006G239500 Sobic001G165901 Sobic001G165901 Sobic010G128350--Sobic001G165901 Sobic004G349600 Sobic004G349600 Sobic010G128350--Sobic004G349600 Sobic010G128350--Sobic010G073900 Sobic002G199800 Sobic002G199800 Sobic010G128350--Sobic002G199800 Sobic010G128350--Sobic001G432200 Sobic002G088600 Sobic002G088600 Sobic010G128350--Sobic002G088600 Sobic010G073900--Sobic003G407700 Sobic010G073900--Sobic002G199800 Sobic010G073900--Sobic009G238650 Sobic010G073900--Sobic006G239500 Sobic010G073900--Sobic004G349600 Sobic010G073900--Sobic001G322400 Sobic010G073900--Sobic010G128350 Sobic010G073900--Sobic009G098700 Sobic009G121200 Sobic009G121200 Sobic010G073900--Sobic009G121200 Sobic001G322400--Sobic001G072000 Sobic001G322400--Sobic010G073900 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic004G279200 Sobic004G279200 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic009G202000 Sobic009G202000 Sobic001G322400--Sobic009G202000 Sobic001G322400--Sobic009G238650 Sobic001G322400--Sobic003G407700 Sobic003G407700--Sobic010G073900 Sobic003G407700--Sobic002G199800 Sobic003G407700--Sobic004G349600 Sobic003G407700--Sobic009G238650 Sobic003G407700--Sobic006G239500 Sobic003G407700--Sobic009G121200 Sobic003G407700--Sobic009G098700 Sobic005G120400 Sobic005G120400 Sobic003G407700--Sobic005G120400 Sobic003G407700--Sobic001G165901 Sobic009G098700--Sobic006G239500 Sobic009G098700--Sobic002G199800 Sobic009G098700--Sobic010G073900 Sobic009G098700--Sobic003G407700 Sobic003G009000 Sobic003G009000 Sobic009G098700--Sobic003G009000 Sobic009G098700--Sobic005G120400 Sobic009G098700--Sobic004G349600 Sobic009G098700--Sobic010G128350 Sobic009G098700--Sobic009G238650 Sobic010G005100--Sobic005G120400 Sobic010G005100--Sobic003G407700 Sobic010G005100--Sobic010G073900 Sobic010G005100--Sobic009G098700 Sobic010G005100--Sobic004G349600 Sobic010G005100--Sobic001G322400 Sobic010G005100--Sobic001G165901 Sobic010G005100--Sobic009G121200 Sobic010G005100--Sobic002G199800 Sobic003G093100 Sobic003G093100 Sobic001G432200--Sobic003G093100 Sobic001G370400 Sobic001G370400 Sobic001G432200--Sobic001G370400 Sobic003G297100 Sobic003G297100 Sobic001G432200--Sobic003G297100 Sobic009G061601 Sobic009G061601 Sobic001G432200--Sobic009G061601 Sobic003G151400 Sobic003G151400 Sobic001G432200--Sobic003G151400 Sobic001G432200--Sobic002G088600 Sobic004G290600 Sobic004G290600 Sobic001G432200--Sobic004G290600 Sobic006G204500 Sobic006G204500 Sobic001G432200--Sobic006G204500 Sobic001G294500 Sobic001G294500 Sobic001G432200--Sobic001G294500 Sobic009G238650--Sobic006G239500 Sobic009G238650--Sobic004G349600 Sobic009G238650--Sobic002G199800 Sobic009G238650--Sobic010G073900 Sobic009G238650--Sobic002G088600 Sobic009G238650--Sobic010G128350 Sobic009G238650--Sobic005G120400 Sobic009G238650--Sobic003G407700 Sobic009G238650--Sobic007G048101 Sobic001G072000--Sobic001G322400 Sobic005G050400 Sobic005G050400 Sobic001G072000--Sobic005G050400 Sobic001G112600 Sobic001G112600 Sobic001G072000--Sobic001G112600 Sobic001G072000--Sobic004G279200 Sobic008G156600 Sobic008G156600 Sobic001G072000--Sobic008G156600 Sobic001G072000--Sobic001G432200 Sobic009G163100 Sobic009G163100 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500
Octagon: transcription factors


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