Gene annotation
Transcriptome id Sobic.006G278900.1
Synonym SbARF16, Sb06g033970, auxin response factor, ARF17
Functional annotation "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt C5YB36
Pfam PF06507 PF02362
Panther DB PTHR31384 PTHR31384:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009725; response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G77850 : auxin response factor 17
RAP-DB (Rice) LOC_Os04g59430.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a010550 , Zm00025a017609 , Zm00025a018176 , Zm00025a041848 , Zm00025a004354 , Zm00025a057486
Brachypodium KQJ85485 , KQJ83629 , KQJ85484
Barley HORVU2Hr1G125740.1 , HORVU2Hr1G089670.1 , HORVU2Hr1G089670.2 , HORVU2Hr1G089670.3 , HORVU2Hr1G089670.4 , HORVU7Hr1G101270.8 , HORVU7Hr1G101270.2 , HORVU7Hr1G101270.3 , HORVU7Hr1G101270.1 , HORVU7Hr1G101270.6 , HORVU7Hr1G101270.7 , HORVU7Hr1G101270.4 , HORVU7Hr1G101270.5 , HORVU3Hr1G074180.1
Wheat TraesCS2D02G577800 , TraesCS7D02G436800 , TraesCS2A02G567300 , TraesCS7B02G346700 , TraesCS7B02G346700 , TraesCS7A02G446900
Populus PNT37134 , PNT37132 , PNT37133 , PNS98668 , PNS98669 , PNS98670 , PNT48662 , PNT48663


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G487000 expressed protein -
2 Sobic.002G363700 expressed protein -
3 Sobic.001G541601 - -
4 Sobic.005G076650 - -
5 Sobic.006G077600 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P
6 Sobic.008G098098 - -
7 Sobic.002G256500 expressed protein -
8 Sobic.007G208500 expressed protein -
9 Sobic.001G072900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.010G128900 beta-galactosidase precursor, putative, expressed -
11 Sobic.002G049500 LTPL77 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
12 Sobic.006G273500 expressed protein -
13 Sobic.005G204300 RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
14 Sobic.001G000900 expressed protein -
15 Sobic.002G237750 - -
16 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
17 Sobic.009G203400 IQ calmodulin-binding motif family protein, putative, expressed -
18 Sobic.007G016000 - -
19 Sobic.001G267500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed -
20 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic006G278900 Sobic006G278900 Sobic001G487000 Sobic001G487000 Sobic006G278900--Sobic001G487000 Sobic002G363700 Sobic002G363700 Sobic006G278900--Sobic002G363700 Sobic001G541601 Sobic001G541601 Sobic006G278900--Sobic001G541601 Sobic005G076650 Sobic005G076650 Sobic006G278900--Sobic005G076650 Sobic006G077600 Sobic006G077600 Sobic006G278900--Sobic006G077600 Sobic008G098098 Sobic008G098098 Sobic006G278900--Sobic008G098098 Sobic002G256500 Sobic002G256500 Sobic006G278900--Sobic002G256500 Sobic007G208500 Sobic007G208500 Sobic006G278900--Sobic007G208500 Sobic001G072900 Sobic001G072900 Sobic006G278900--Sobic001G072900 Sobic001G487000--Sobic002G363700 Sobic001G487000--Sobic001G541601 Sobic001G487000--Sobic006G278900 Sobic001G487000--Sobic001G072900 Sobic001G487000--Sobic006G077600 Sobic001G487000--Sobic007G208500 Sobic010G096500 Sobic010G096500 Sobic001G487000--Sobic010G096500 Sobic003G054100 Sobic003G054100 Sobic001G487000--Sobic003G054100 Sobic010G196300 Sobic010G196300 Sobic001G487000--Sobic010G196300 Sobic002G363700--Sobic001G487000 Sobic002G363700--Sobic001G541601 Sobic002G363700--Sobic006G278900 Sobic002G363700--Sobic001G072900 Sobic002G363700--Sobic007G208500 Sobic010G128900 Sobic010G128900 Sobic002G363700--Sobic010G128900 Sobic002G363700--Sobic002G256500 Sobic002G363700--Sobic008G098098 Sobic004G180600 Sobic004G180600 Sobic002G363700--Sobic004G180600 Sobic006G264700 Sobic006G264700 Sobic001G541601--Sobic006G264700 Sobic001G541601--Sobic010G096500 Sobic001G229100 Sobic001G229100 Sobic001G541601--Sobic001G229100 Sobic003G270700 Sobic003G270700 Sobic001G541601--Sobic003G270700 Sobic001G541601--Sobic010G196300 Sobic008G139500 Sobic008G139500 Sobic001G541601--Sobic008G139500 Sobic001G541601--Sobic001G487000 Sobic004G323500 Sobic004G323500 Sobic001G541601--Sobic004G323500 Sobic004G025900 Sobic004G025900 Sobic001G541601--Sobic004G025900 Sobic005G076650--Sobic008G098098 Sobic007G016000 Sobic007G016000 Sobic005G076650--Sobic007G016000 Sobic009G088401 Sobic009G088401 Sobic005G076650--Sobic009G088401 Sobic004G043200 Sobic004G043200 Sobic005G076650--Sobic004G043200 Sobic007G072400 Sobic007G072400 Sobic005G076650--Sobic007G072400 Sobic010G152700 Sobic010G152700 Sobic005G076650--Sobic010G152700 Sobic008G119200 Sobic008G119200 Sobic005G076650--Sobic008G119200 Sobic001G516200 Sobic001G516200 Sobic005G076650--Sobic001G516200 Sobic006G273500 Sobic006G273500 Sobic005G076650--Sobic006G273500 Sobic002G313100 Sobic002G313100 Sobic006G077600--Sobic002G313100 Sobic006G077600--Sobic001G072900 Sobic006G077600--Sobic001G487000 Sobic006G077600--Sobic001G541601 Sobic006G077600--Sobic010G196300 Sobic004G076850 Sobic004G076850 Sobic006G077600--Sobic004G076850 Sobic003G293100 Sobic003G293100 Sobic006G077600--Sobic003G293100 Sobic008G166100 Sobic008G166100 Sobic006G077600--Sobic008G166100 Sobic009G201000 Sobic009G201000 Sobic006G077600--Sobic009G201000 Sobic008G098098--Sobic008G119200 Sobic001G000900 Sobic001G000900 Sobic008G098098--Sobic001G000900 Sobic008G098098--Sobic006G273500 Sobic009G223700 Sobic009G223700 Sobic008G098098--Sobic009G223700 Sobic005G231800 Sobic005G231800 Sobic008G098098--Sobic005G231800 Sobic004G226300 Sobic004G226300 Sobic008G098098--Sobic004G226300 Sobic007G183000 Sobic007G183000 Sobic008G098098--Sobic007G183000 Sobic008G098098--Sobic009G088401 Sobic001G527400 Sobic001G527400 Sobic008G098098--Sobic001G527400 Sobic002G256500--Sobic008G098098 Sobic002G256500--Sobic006G273500 Sobic002G256500--Sobic008G119200 Sobic004G221150 Sobic004G221150 Sobic002G256500--Sobic004G221150 Sobic002G256500--Sobic009G088401 Sobic002G256500--Sobic007G016000 Sobic002G256500--Sobic001G000900 Sobic002G285525 Sobic002G285525 Sobic002G256500--Sobic002G285525 Sobic002G256500--Sobic009G223700 Sobic007G208500--Sobic006G273500 Sobic009G203400 Sobic009G203400 Sobic007G208500--Sobic009G203400 Sobic007G208500--Sobic004G180600 Sobic007G208500--Sobic008G098098 Sobic006G186200 Sobic006G186200 Sobic007G208500--Sobic006G186200 Sobic007G208500--Sobic002G256500 Sobic004G061600 Sobic004G061600 Sobic007G208500--Sobic004G061600 Sobic007G208500--Sobic004G043200 Sobic003G390300 Sobic003G390300 Sobic007G208500--Sobic003G390300 Sobic001G267500 Sobic001G267500 Sobic001G072900--Sobic001G267500 Sobic001G072900--Sobic001G487000 Sobic001G072900--Sobic006G077600 Sobic001G072900--Sobic002G363700 Sobic003G377200 Sobic003G377200 Sobic001G072900--Sobic003G377200 Sobic001G072900--Sobic001G541601 Sobic001G072900--Sobic007G208500 Sobic001G072900--Sobic006G278900 Sobic009G228300 Sobic009G228300 Sobic001G072900--Sobic009G228300
Octagon: transcription factors


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