Gene annotation
Transcriptome id Sobic.006G278800.1,Sobic.006G278800.2
Synonym Sb06g033960
Functional annotation expressed protein
UniProt A0A1Z5RG08 , A0A1B6PPC3
Pfam -
Panther DB PTHR35995
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21830 : -
RAP-DB (Rice) LOC_Os04g59420.1 : expressed protein
MaizeGDB (Corn) Zm00025a010549
Brachypodium PNT62226 , PNT62225 , KQJ85483
Barley HORVU0Hr1G040220.2 , HORVU0Hr1G040220.1 , HORVU3Hr1G006220.1 , HORVU3Hr1G006220.2
Wheat TraesCS2B02G629200 , TraesCS2D02G577900 , TraesCS2A02G567400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G229800 DUF617 domain containing protein, expressed -
2 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -
3 Sobic.004G059100 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed -
4 Sobic.002G306300 nucleobase-ascorbate transporter, putative, expressed K14611: SLC23A1, solute carrier family 23 (nucleobase transporter), member 1
5 Sobic.001G474300 expressed protein -
6 Sobic.008G145300 BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
7 Sobic.006G108000 formin, putative, expressed -
8 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
9 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
10 Sobic.003G195300 harpin-induced protein 1 domain containing protein, expressed -
11 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
12 Sobic.007G068500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
13 Sobic.002G330800 BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
14 Sobic.002G403100 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
15 Sobic.002G337300 expressed protein -
16 Sobic.002G285300 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsSAUR53 - Auxin-responsive SAUR gene family member, expressed -
17 Sobic.003G301200 expressed protein -
18 Sobic.001G026700 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
19 Sobic.003G397000 expressed protein -
20 Sobic.003G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide-N4-asparagine amidase A, putative, expressed -


Gene co-expression network
sample Sobic006G278800 Sobic006G278800 Sobic002G229800 Sobic002G229800 Sobic006G278800--Sobic002G229800 Sobic004G155900 Sobic004G155900 Sobic006G278800--Sobic004G155900 Sobic004G059100 Sobic004G059100 Sobic006G278800--Sobic004G059100 Sobic002G306300 Sobic002G306300 Sobic006G278800--Sobic002G306300 Sobic001G474300 Sobic001G474300 Sobic006G278800--Sobic001G474300 Sobic008G145300 Sobic008G145300 Sobic006G278800--Sobic008G145300 Sobic006G108000 Sobic006G108000 Sobic006G278800--Sobic006G108000 Sobic002G348700 Sobic002G348700 Sobic006G278800--Sobic002G348700 Sobic009G254400 Sobic009G254400 Sobic006G278800--Sobic009G254400 Sobic002G229800--Sobic006G278800 Sobic002G229800--Sobic004G155900 Sobic002G229800--Sobic006G108000 Sobic002G229800--Sobic001G474300 Sobic010G191100 Sobic010G191100 Sobic002G229800--Sobic010G191100 Sobic004G336700 Sobic004G336700 Sobic002G229800--Sobic004G336700 Sobic002G229800--Sobic008G145300 Sobic002G229800--Sobic009G254400 Sobic003G301200 Sobic003G301200 Sobic002G229800--Sobic003G301200 Sobic003G235800 Sobic003G235800 Sobic004G155900--Sobic003G235800 Sobic004G155900--Sobic003G301200 Sobic004G155900--Sobic010G191100 Sobic002G416000 Sobic002G416000 Sobic004G155900--Sobic002G416000 Sobic004G155900--Sobic002G229800 Sobic008G137500 Sobic008G137500 Sobic004G155900--Sobic008G137500 Sobic007G081300 Sobic007G081300 Sobic004G155900--Sobic007G081300 Sobic010G189800 Sobic010G189800 Sobic004G155900--Sobic010G189800 Sobic006G278400 Sobic006G278400 Sobic004G155900--Sobic006G278400 Sobic009G163700 Sobic009G163700 Sobic004G059100--Sobic009G163700 Sobic010G042200 Sobic010G042200 Sobic004G059100--Sobic010G042200 Sobic001G247000 Sobic001G247000 Sobic004G059100--Sobic001G247000 Sobic005G131900 Sobic005G131900 Sobic004G059100--Sobic005G131900 Sobic004G059100--Sobic006G278800 Sobic002G035500 Sobic002G035500 Sobic004G059100--Sobic002G035500 Sobic004G059100--Sobic006G108000 Sobic002G394200 Sobic002G394200 Sobic004G059100--Sobic002G394200 Sobic005G017100 Sobic005G017100 Sobic004G059100--Sobic005G017100 Sobic006G247500 Sobic006G247500 Sobic002G306300--Sobic006G247500 Sobic004G297800 Sobic004G297800 Sobic002G306300--Sobic004G297800 Sobic002G306300--Sobic010G189800 Sobic002G285300 Sobic002G285300 Sobic002G306300--Sobic002G285300 Sobic002G306300--Sobic008G145300 Sobic004G066300 Sobic004G066300 Sobic002G306300--Sobic004G066300 Sobic002G306300--Sobic007G081300 Sobic004G066000 Sobic004G066000 Sobic002G306300--Sobic004G066000 Sobic002G306300--Sobic006G278800 Sobic003G282600 Sobic003G282600 Sobic001G474300--Sobic003G282600 Sobic007G165800 Sobic007G165800 Sobic001G474300--Sobic007G165800 Sobic001G474300--Sobic002G229800 Sobic001G518000 Sobic001G518000 Sobic001G474300--Sobic001G518000 Sobic010G014500 Sobic010G014500 Sobic001G474300--Sobic010G014500 Sobic009G173200 Sobic009G173200 Sobic001G474300--Sobic009G173200 Sobic010G077000 Sobic010G077000 Sobic001G474300--Sobic010G077000 Sobic003G325400 Sobic003G325400 Sobic001G474300--Sobic003G325400 Sobic001G439800 Sobic001G439800 Sobic001G474300--Sobic001G439800 Sobic003G183800 Sobic003G183800 Sobic008G145300--Sobic003G183800 Sobic008G145300--Sobic002G306300 Sobic008G145300--Sobic002G229800 Sobic007G113900 Sobic007G113900 Sobic008G145300--Sobic007G113900 Sobic008G145300--Sobic004G336700 Sobic001G441700 Sobic001G441700 Sobic008G145300--Sobic001G441700 Sobic004G205500 Sobic004G205500 Sobic008G145300--Sobic004G205500 Sobic005G169700 Sobic005G169700 Sobic008G145300--Sobic005G169700 Sobic003G174900 Sobic003G174900 Sobic008G145300--Sobic003G174900 Sobic003G406500 Sobic003G406500 Sobic006G108000--Sobic003G406500 Sobic001G331100 Sobic001G331100 Sobic006G108000--Sobic001G331100 Sobic004G115600 Sobic004G115600 Sobic006G108000--Sobic004G115600 Sobic008G163800 Sobic008G163800 Sobic006G108000--Sobic008G163800 Sobic006G245200 Sobic006G245200 Sobic006G108000--Sobic006G245200 Sobic002G221400 Sobic002G221400 Sobic006G108000--Sobic002G221400 Sobic006G108000--Sobic009G254400 Sobic003G040100 Sobic003G040100 Sobic006G108000--Sobic003G040100 Sobic007G153300 Sobic007G153300 Sobic006G108000--Sobic007G153300 Sobic002G216600 Sobic002G216600 Sobic002G348700--Sobic002G216600 Sobic004G199700 Sobic004G199700 Sobic002G348700--Sobic004G199700 Sobic002G348700--Sobic003G174900 Sobic007G210900 Sobic007G210900 Sobic002G348700--Sobic007G210900 Sobic002G348700--Sobic004G205500 Sobic003G420800 Sobic003G420800 Sobic002G348700--Sobic003G420800 Sobic009G259500 Sobic009G259500 Sobic002G348700--Sobic009G259500 Sobic006G167300 Sobic006G167300 Sobic002G348700--Sobic006G167300 Sobic009G164900 Sobic009G164900 Sobic002G348700--Sobic009G164900 Sobic001G263500 Sobic001G263500 Sobic009G254400--Sobic001G263500 Sobic009G254400--Sobic003G406500 Sobic009G254400--Sobic008G163800 Sobic002G330800 Sobic002G330800 Sobic009G254400--Sobic002G330800 Sobic009G254400--Sobic001G331100 Sobic010G179000 Sobic010G179000 Sobic009G254400--Sobic010G179000 Sobic009G254400--Sobic006G108000 Sobic009G254400--Sobic006G278400 Sobic006G079100 Sobic006G079100 Sobic009G254400--Sobic006G079100
Octagon: transcription factors


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