Gene annotation
Transcriptome id Sobic.003G195300.1
Synonym Sb03g025840
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt A0A1W0VY30
Pfam PF03168
Panther DB PTHR31234 PTHR31234:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11890 : -
RAP-DB (Rice) LOC_Os01g39290.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028455 , Zm00025a038397
Brachypodium KQK08391
Barley HORVU3Hr1G049940.2 , HORVU3Hr1G049940.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G195300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G155900 heavy metal-associated domain containing protein, expressed -
2 Sobic.006G278800 expressed protein -
3 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
4 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.002G229800 DUF617 domain containing protein, expressed -
6 Sobic.001G030100 GIL1, putative, expressed -
7 Sobic.006G053800 LGC1, putative, expressed -
8 Sobic.002G026200 stress-induced protein, putative, expressed -
9 Sobic.001G474300 expressed protein -
10 Sobic.004G307800 "SGL1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659889)@expressed protein -
11 Sobic.003G235800 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
12 Sobic.003G145100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.008G189600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
14 Sobic.002G416000 pectinesterase, putative, expressed K01051: pectinesterase
15 Sobic.005G086700 ZF-HD protein dimerisation region containing protein, expressed -
16 Sobic.010G136500 expressed protein -
17 Sobic.010G242200 expressed protein -
18 Sobic.002G154300 serine/threonine-protein kinase receptor precursor, putative, expressed -
19 Sobic.003G364700 expressed protein -
20 Sobic.007G197700 BHLH transcription factor, putative, expressed -


Gene co-expression network
sample Sobic003G195300 Sobic003G195300 Sobic004G155900 Sobic004G155900 Sobic003G195300--Sobic004G155900 Sobic006G278800 Sobic006G278800 Sobic003G195300--Sobic006G278800 Sobic010G191100 Sobic010G191100 Sobic003G195300--Sobic010G191100 Sobic008G137500 Sobic008G137500 Sobic003G195300--Sobic008G137500 Sobic002G229800 Sobic002G229800 Sobic003G195300--Sobic002G229800 Sobic001G030100 Sobic001G030100 Sobic003G195300--Sobic001G030100 Sobic006G053800 Sobic006G053800 Sobic003G195300--Sobic006G053800 Sobic002G026200 Sobic002G026200 Sobic003G195300--Sobic002G026200 Sobic001G474300 Sobic001G474300 Sobic003G195300--Sobic001G474300 Sobic003G235800 Sobic003G235800 Sobic004G155900--Sobic003G235800 Sobic003G301200 Sobic003G301200 Sobic004G155900--Sobic003G301200 Sobic004G155900--Sobic010G191100 Sobic002G416000 Sobic002G416000 Sobic004G155900--Sobic002G416000 Sobic004G155900--Sobic002G229800 Sobic004G155900--Sobic008G137500 Sobic007G081300 Sobic007G081300 Sobic004G155900--Sobic007G081300 Sobic010G189800 Sobic010G189800 Sobic004G155900--Sobic010G189800 Sobic006G278400 Sobic006G278400 Sobic004G155900--Sobic006G278400 Sobic006G278800--Sobic002G229800 Sobic006G278800--Sobic004G155900 Sobic004G059100 Sobic004G059100 Sobic006G278800--Sobic004G059100 Sobic002G306300 Sobic002G306300 Sobic006G278800--Sobic002G306300 Sobic006G278800--Sobic001G474300 Sobic008G145300 Sobic008G145300 Sobic006G278800--Sobic008G145300 Sobic006G108000 Sobic006G108000 Sobic006G278800--Sobic006G108000 Sobic002G348700 Sobic002G348700 Sobic006G278800--Sobic002G348700 Sobic009G254400 Sobic009G254400 Sobic006G278800--Sobic009G254400 Sobic010G191100--Sobic008G137500 Sobic010G191100--Sobic004G155900 Sobic009G070500 Sobic009G070500 Sobic010G191100--Sobic009G070500 Sobic002G154300 Sobic002G154300 Sobic010G191100--Sobic002G154300 Sobic006G163600 Sobic006G163600 Sobic010G191100--Sobic006G163600 Sobic010G246500 Sobic010G246500 Sobic010G191100--Sobic010G246500 Sobic010G191100--Sobic003G301200 Sobic010G191100--Sobic002G229800 Sobic001G273100 Sobic001G273100 Sobic010G191100--Sobic001G273100 Sobic008G137500--Sobic010G191100 Sobic005G111600 Sobic005G111600 Sobic008G137500--Sobic005G111600 Sobic002G408500 Sobic002G408500 Sobic008G137500--Sobic002G408500 Sobic009G229100 Sobic009G229100 Sobic008G137500--Sobic009G229100 Sobic006G228100 Sobic006G228100 Sobic008G137500--Sobic006G228100 Sobic009G070000 Sobic009G070000 Sobic008G137500--Sobic009G070000 Sobic008G137500--Sobic004G155900 Sobic008G137500--Sobic010G246500 Sobic008G137500--Sobic002G154300 Sobic002G229800--Sobic006G278800 Sobic002G229800--Sobic004G155900 Sobic002G229800--Sobic006G108000 Sobic002G229800--Sobic001G474300 Sobic002G229800--Sobic010G191100 Sobic004G336700 Sobic004G336700 Sobic002G229800--Sobic004G336700 Sobic002G229800--Sobic008G145300 Sobic002G229800--Sobic009G254400 Sobic002G229800--Sobic003G301200 Sobic003G387300 Sobic003G387300 Sobic001G030100--Sobic003G387300 Sobic006G129800 Sobic006G129800 Sobic001G030100--Sobic006G129800 Sobic005G210600 Sobic005G210600 Sobic001G030100--Sobic005G210600 Sobic004G180400 Sobic004G180400 Sobic001G030100--Sobic004G180400 Sobic006G069500 Sobic006G069500 Sobic001G030100--Sobic006G069500 Sobic004G154900 Sobic004G154900 Sobic001G030100--Sobic004G154900 Sobic005G188400 Sobic005G188400 Sobic001G030100--Sobic005G188400 Sobic009G178900 Sobic009G178900 Sobic001G030100--Sobic009G178900 Sobic001G030100--Sobic002G154300 Sobic001G267266 Sobic001G267266 Sobic006G053800--Sobic001G267266 Sobic006G053800--Sobic009G070000 Sobic006G053800--Sobic009G229100 Sobic003G364700 Sobic003G364700 Sobic006G053800--Sobic003G364700 Sobic006G053800--Sobic005G111600 Sobic001G049000 Sobic001G049000 Sobic006G053800--Sobic001G049000 Sobic006G053800--Sobic008G137500 Sobic002G302100 Sobic002G302100 Sobic006G053800--Sobic002G302100 Sobic002G356700 Sobic002G356700 Sobic006G053800--Sobic002G356700 Sobic010G242200 Sobic010G242200 Sobic002G026200--Sobic010G242200 Sobic007G027301 Sobic007G027301 Sobic002G026200--Sobic007G027301 Sobic002G026200--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic002G026200--Sobic003G047300 Sobic008G127200 Sobic008G127200 Sobic002G026200--Sobic008G127200 Sobic010G197400 Sobic010G197400 Sobic002G026200--Sobic010G197400 Sobic002G003900 Sobic002G003900 Sobic002G026200--Sobic002G003900 Sobic006G271100 Sobic006G271100 Sobic002G026200--Sobic006G271100 Sobic010G074960 Sobic010G074960 Sobic002G026200--Sobic010G074960 Sobic003G282600 Sobic003G282600 Sobic001G474300--Sobic003G282600 Sobic007G165800 Sobic007G165800 Sobic001G474300--Sobic007G165800 Sobic001G474300--Sobic002G229800 Sobic001G518000 Sobic001G518000 Sobic001G474300--Sobic001G518000 Sobic010G014500 Sobic010G014500 Sobic001G474300--Sobic010G014500 Sobic009G173200 Sobic009G173200 Sobic001G474300--Sobic009G173200 Sobic010G077000 Sobic010G077000 Sobic001G474300--Sobic010G077000 Sobic003G325400 Sobic003G325400 Sobic001G474300--Sobic003G325400 Sobic001G439800 Sobic001G439800 Sobic001G474300--Sobic001G439800
Octagon: transcription factors


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