Gene annotation
Transcriptome id Sobic.004G307800.1
Synonym Sb04g034050
Functional annotation "SGL1(Ortholog in rice:Nakagawa et al., 2012)" (PubMedID : 31659889)
expressed protein
UniProt A0A1Z5RPU2
Pfam -
Panther DB PTHR31722
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66800 : -
RAP-DB (Rice) LOC_Os02g52490.2 : expressed protein
MaizeGDB (Corn) Zm00025a047258 , Zm00025a033104 , Zm00025a022211
Brachypodium -
Barley HORVU6Hr1G078700.4 , HORVU6Hr1G078700.5 , HORVU6Hr1G078700.1 , HORVU6Hr1G078700.3 , HORVU6Hr1G078700.2
Wheat TraesCS6B02G352000 , TraesCS6B02G352000 , TraesCS6A02G321300 , TraesCS6A02G321300
Populus -


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cDNA sequences
Sobic.004G307800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
2 Sobic.006G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@- -
3 Sobic.001G160100 IQ calmodulin-binding motif family protein, putative, expressed -
4 Sobic.005G168400 expressed protein -
5 Sobic.002G426000 - -
6 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
7 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.010G220800 zinc-binding protein, putative, expressed -
9 Sobic.010G234800 expressed protein -
10 Sobic.003G319900 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
11 Sobic.004G000800 ZOS7-01 - C2H2 zinc finger protein, expressed -
12 Sobic.010G202100 expressed protein -
13 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.006G065400 expressed protein -
15 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
16 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
17 Sobic.006G201300 expressed protein -
18 Sobic.004G086500 expressed protein -
19 Sobic.002G430700 glycosyltransferase family 43 protein, putative, expressed -
20 Sobic.002G343600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 23108465)@polygalacturonase inhibitor 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G307800 Sobic004G307800 Sobic002G268300 Sobic002G268300 Sobic004G307800--Sobic002G268300 Sobic006G076000 Sobic006G076000 Sobic004G307800--Sobic006G076000 Sobic001G160100 Sobic001G160100 Sobic004G307800--Sobic001G160100 Sobic005G168400 Sobic005G168400 Sobic004G307800--Sobic005G168400 Sobic002G426000 Sobic002G426000 Sobic004G307800--Sobic002G426000 Sobic010G070900 Sobic010G070900 Sobic004G307800--Sobic010G070900 Sobic003G238800 Sobic003G238800 Sobic004G307800--Sobic003G238800 Sobic010G220800 Sobic010G220800 Sobic004G307800--Sobic010G220800 Sobic010G234800 Sobic010G234800 Sobic004G307800--Sobic010G234800 Sobic004G000800 Sobic004G000800 Sobic002G268300--Sobic004G000800 Sobic001G313800 Sobic001G313800 Sobic002G268300--Sobic001G313800 Sobic002G268300--Sobic003G238800 Sobic002G268300--Sobic010G220800 Sobic004G254300 Sobic004G254300 Sobic002G268300--Sobic004G254300 Sobic002G268300--Sobic002G426000 Sobic002G344201 Sobic002G344201 Sobic002G268300--Sobic002G344201 Sobic004G056500 Sobic004G056500 Sobic002G268300--Sobic004G056500 Sobic003G231000 Sobic003G231000 Sobic002G268300--Sobic003G231000 Sobic006G076000--Sobic004G254300 Sobic002G343600 Sobic002G343600 Sobic006G076000--Sobic002G343600 Sobic007G218400 Sobic007G218400 Sobic006G076000--Sobic007G218400 Sobic001G139850 Sobic001G139850 Sobic006G076000--Sobic001G139850 Sobic009G059866 Sobic009G059866 Sobic006G076000--Sobic009G059866 Sobic009G059932 Sobic009G059932 Sobic006G076000--Sobic009G059932 Sobic004G086500 Sobic004G086500 Sobic006G076000--Sobic004G086500 Sobic009G059800 Sobic009G059800 Sobic006G076000--Sobic009G059800 Sobic006G076000--Sobic010G220800 Sobic003G319900 Sobic003G319900 Sobic001G160100--Sobic003G319900 Sobic001G160100--Sobic004G086500 Sobic001G160100--Sobic005G168400 Sobic001G160100--Sobic006G076000 Sobic006G065400 Sobic006G065400 Sobic001G160100--Sobic006G065400 Sobic001G160100--Sobic002G343600 Sobic007G132900 Sobic007G132900 Sobic001G160100--Sobic007G132900 Sobic001G160100--Sobic004G000800 Sobic004G237000 Sobic004G237000 Sobic001G160100--Sobic004G237000 Sobic010G168700 Sobic010G168700 Sobic005G168400--Sobic010G168700 Sobic001G143400 Sobic001G143400 Sobic005G168400--Sobic001G143400 Sobic004G003700 Sobic004G003700 Sobic005G168400--Sobic004G003700 Sobic005G168400--Sobic003G319900 Sobic001G393200 Sobic001G393200 Sobic005G168400--Sobic001G393200 Sobic009G047500 Sobic009G047500 Sobic005G168400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic005G168400--Sobic005G199700 Sobic001G379900 Sobic001G379900 Sobic005G168400--Sobic001G379900 Sobic007G152300 Sobic007G152300 Sobic005G168400--Sobic007G152300 Sobic002G426000--Sobic002G268300 Sobic002G426000--Sobic004G000800 Sobic002G426000--Sobic010G070900 Sobic002G426000--Sobic010G220800 Sobic002G426000--Sobic010G168700 Sobic007G121200 Sobic007G121200 Sobic002G426000--Sobic007G121200 Sobic003G046400 Sobic003G046400 Sobic002G426000--Sobic003G046400 Sobic002G426000--Sobic004G237000 Sobic007G033700 Sobic007G033700 Sobic002G426000--Sobic007G033700 Sobic007G147200 Sobic007G147200 Sobic010G070900--Sobic007G147200 Sobic002G360600 Sobic002G360600 Sobic010G070900--Sobic002G360600 Sobic010G070900--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic010G070900--Sobic006G163300 Sobic006G107500 Sobic006G107500 Sobic010G070900--Sobic006G107500 Sobic010G070900--Sobic002G426000 Sobic010G070900--Sobic007G033700 Sobic010G070900--Sobic010G168700 Sobic010G070900--Sobic001G143400 Sobic003G238800--Sobic002G268300 Sobic003G238800--Sobic002G344201 Sobic003G238800--Sobic003G231000 Sobic004G350500 Sobic004G350500 Sobic003G238800--Sobic004G350500 Sobic003G238800--Sobic004G254300 Sobic003G238800--Sobic001G313800 Sobic010G169200 Sobic010G169200 Sobic003G238800--Sobic010G169200 Sobic001G456000 Sobic001G456000 Sobic003G238800--Sobic001G456000 Sobic003G238800--Sobic010G220800 Sobic010G220800--Sobic001G313800 Sobic010G220800--Sobic004G254300 Sobic010G220800--Sobic007G218400 Sobic010G220800--Sobic002G268300 Sobic010G220800--Sobic010G169200 Sobic010G220800--Sobic009G059800 Sobic010G220800--Sobic009G059932 Sobic010G220800--Sobic009G059866 Sobic002G102800 Sobic002G102800 Sobic010G220800--Sobic002G102800 Sobic001G098900 Sobic001G098900 Sobic010G234800--Sobic001G098900 Sobic010G215300 Sobic010G215300 Sobic010G234800--Sobic010G215300 Sobic010G202100 Sobic010G202100 Sobic010G234800--Sobic010G202100 Sobic003G047200 Sobic003G047200 Sobic010G234800--Sobic003G047200 Sobic008G114500 Sobic008G114500 Sobic010G234800--Sobic008G114500 Sobic002G293800 Sobic002G293800 Sobic010G234800--Sobic002G293800 Sobic007G017700 Sobic007G017700 Sobic010G234800--Sobic007G017700 Sobic003G414400 Sobic003G414400 Sobic010G234800--Sobic003G414400 Sobic001G140600 Sobic001G140600 Sobic010G234800--Sobic001G140600
Octagon: transcription factors


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