Gene annotation
Transcriptome id Sobic.003G319900.1
Synonym Gretchen Hagen3, Sb03g036680, GH3.6, DFL1, SbGH3-9
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root" (PubMedID : 20499123)
OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt C5XLS5
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF8
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54510 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os01g57610.1 : OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a015082 , Zm00025a037889 , Zm00025a002969 , Zm00025a027255 , Zm00025a048626
Brachypodium KQK09904 , KQK05547 , KQK10103
Barley HORVU3Hr1G077360.6 , HORVU3Hr1G077360.5 , HORVU1Hr1G066340.10 , HORVU1Hr1G066340.4 , HORVU1Hr1G066340.5 , HORVU1Hr1G066340.6 , HORVU1Hr1G066340.7 , HORVU1Hr1G066340.1 , HORVU1Hr1G066340.2 , HORVU1Hr1G066340.3 , HORVU3Hr1G077360.2 , HORVU3Hr1G077360.3 , HORVU3Hr1G077360.1 , HORVU1Hr1G066340.8 , HORVU1Hr1G066340.9 , HORVU3Hr1G077360.4
Wheat TraesCS1B02G332400 , TraesCS3B02G353200 , TraesCS1A02G320200 , TraesCS1D02G320000 , TraesCS3A02G324100 , TraesCS3D02G317600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G168400 expressed protein -
2 Sobic.010G220800 zinc-binding protein, putative, expressed -
3 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
4 Sobic.010G169200 homeobox domain containing protein, expressed -
5 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
7 Sobic.003G091700 seven in absentia protein family protein, expressed -
8 Sobic.001G160100 IQ calmodulin-binding motif family protein, putative, expressed -
9 Sobic.002G426000 - -
10 Sobic.004G000800 ZOS7-01 - C2H2 zinc finger protein, expressed -
11 Sobic.005G131000 expressed protein -
12 Sobic.010G048500 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
13 Sobic.010G168700 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.001G313800 B3 DNA binding domain containing protein, expressed -
15 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
17 Sobic.004G086500 expressed protein -
18 Sobic.006G084201 - -
19 Sobic.006G156200 - -
20 Sobic.006G232900 expressed protein -


Gene co-expression network
sample Sobic003G319900 Sobic003G319900 Sobic005G168400 Sobic005G168400 Sobic003G319900--Sobic005G168400 Sobic010G220800 Sobic010G220800 Sobic003G319900--Sobic010G220800 Sobic002G205000 Sobic002G205000 Sobic003G319900--Sobic002G205000 Sobic010G169200 Sobic010G169200 Sobic003G319900--Sobic010G169200 Sobic004G237000 Sobic004G237000 Sobic003G319900--Sobic004G237000 Sobic002G268300 Sobic002G268300 Sobic003G319900--Sobic002G268300 Sobic003G091700 Sobic003G091700 Sobic003G319900--Sobic003G091700 Sobic001G160100 Sobic001G160100 Sobic003G319900--Sobic001G160100 Sobic002G426000 Sobic002G426000 Sobic003G319900--Sobic002G426000 Sobic010G168700 Sobic010G168700 Sobic005G168400--Sobic010G168700 Sobic001G143400 Sobic001G143400 Sobic005G168400--Sobic001G143400 Sobic004G003700 Sobic004G003700 Sobic005G168400--Sobic004G003700 Sobic005G168400--Sobic003G319900 Sobic001G393200 Sobic001G393200 Sobic005G168400--Sobic001G393200 Sobic009G047500 Sobic009G047500 Sobic005G168400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic005G168400--Sobic005G199700 Sobic001G379900 Sobic001G379900 Sobic005G168400--Sobic001G379900 Sobic007G152300 Sobic007G152300 Sobic005G168400--Sobic007G152300 Sobic001G313800 Sobic001G313800 Sobic010G220800--Sobic001G313800 Sobic004G254300 Sobic004G254300 Sobic010G220800--Sobic004G254300 Sobic007G218400 Sobic007G218400 Sobic010G220800--Sobic007G218400 Sobic010G220800--Sobic002G268300 Sobic010G220800--Sobic010G169200 Sobic009G059800 Sobic009G059800 Sobic010G220800--Sobic009G059800 Sobic009G059932 Sobic009G059932 Sobic010G220800--Sobic009G059932 Sobic009G059866 Sobic009G059866 Sobic010G220800--Sobic009G059866 Sobic002G102800 Sobic002G102800 Sobic010G220800--Sobic002G102800 Sobic009G243000 Sobic009G243000 Sobic002G205000--Sobic009G243000 Sobic007G033700 Sobic007G033700 Sobic002G205000--Sobic007G033700 Sobic002G078900 Sobic002G078900 Sobic002G205000--Sobic002G078900 Sobic002G205000--Sobic004G237000 Sobic002G205000--Sobic003G091700 Sobic002G205000--Sobic003G319900 Sobic001G137600 Sobic001G137600 Sobic002G205000--Sobic001G137600 Sobic003G006000 Sobic003G006000 Sobic002G205000--Sobic003G006000 Sobic005G131000 Sobic005G131000 Sobic002G205000--Sobic005G131000 Sobic010G169200--Sobic007G218400 Sobic010G169200--Sobic010G220800 Sobic010G169200--Sobic009G059800 Sobic010G169200--Sobic004G254300 Sobic010G169200--Sobic009G059932 Sobic010G237400 Sobic010G237400 Sobic010G169200--Sobic010G237400 Sobic010G169200--Sobic009G059866 Sobic010G169200--Sobic002G102800 Sobic004G056500 Sobic004G056500 Sobic010G169200--Sobic004G056500 Sobic003G316601 Sobic003G316601 Sobic004G237000--Sobic003G316601 Sobic003G085900 Sobic003G085900 Sobic004G237000--Sobic003G085900 Sobic004G237000--Sobic007G033700 Sobic003G046400 Sobic003G046400 Sobic004G237000--Sobic003G046400 Sobic010G070900 Sobic010G070900 Sobic004G237000--Sobic010G070900 Sobic004G237000--Sobic002G426000 Sobic007G147200 Sobic007G147200 Sobic004G237000--Sobic007G147200 Sobic004G237000--Sobic009G243000 Sobic001G106500 Sobic001G106500 Sobic004G237000--Sobic001G106500 Sobic004G000800 Sobic004G000800 Sobic002G268300--Sobic004G000800 Sobic002G268300--Sobic001G313800 Sobic003G238800 Sobic003G238800 Sobic002G268300--Sobic003G238800 Sobic002G268300--Sobic010G220800 Sobic002G268300--Sobic004G254300 Sobic002G268300--Sobic002G426000 Sobic002G344201 Sobic002G344201 Sobic002G268300--Sobic002G344201 Sobic002G268300--Sobic004G056500 Sobic003G231000 Sobic003G231000 Sobic002G268300--Sobic003G231000 Sobic003G091700--Sobic005G131000 Sobic010G048500 Sobic010G048500 Sobic003G091700--Sobic010G048500 Sobic003G091700--Sobic002G268300 Sobic003G091700--Sobic004G000800 Sobic006G156200 Sobic006G156200 Sobic003G091700--Sobic006G156200 Sobic003G091700--Sobic003G231000 Sobic003G091700--Sobic002G205000 Sobic002G066350 Sobic002G066350 Sobic003G091700--Sobic002G066350 Sobic003G232800 Sobic003G232800 Sobic003G091700--Sobic003G232800 Sobic001G160100--Sobic003G319900 Sobic004G086500 Sobic004G086500 Sobic001G160100--Sobic004G086500 Sobic001G160100--Sobic005G168400 Sobic006G076000 Sobic006G076000 Sobic001G160100--Sobic006G076000 Sobic006G065400 Sobic006G065400 Sobic001G160100--Sobic006G065400 Sobic002G343600 Sobic002G343600 Sobic001G160100--Sobic002G343600 Sobic007G132900 Sobic007G132900 Sobic001G160100--Sobic007G132900 Sobic001G160100--Sobic004G000800 Sobic001G160100--Sobic004G237000 Sobic002G426000--Sobic002G268300 Sobic002G426000--Sobic004G000800 Sobic002G426000--Sobic010G070900 Sobic002G426000--Sobic010G220800 Sobic002G426000--Sobic010G168700 Sobic007G121200 Sobic007G121200 Sobic002G426000--Sobic007G121200 Sobic002G426000--Sobic003G046400 Sobic002G426000--Sobic004G237000 Sobic002G426000--Sobic007G033700
Octagon: transcription factors


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