Gene annotation
Transcriptome id Sobic.003G091700.1
Synonym Sb03g007670
Functional annotation seven in absentia protein family protein, expressed
UniProt C5XE60
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37870 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g03170.1 : seven in absentia protein family protein, expressed
MaizeGDB (Corn) Zm00025a035524
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G131000 expressed protein -
2 Sobic.010G048500 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
3 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
4 Sobic.004G000800 ZOS7-01 - C2H2 zinc finger protein, expressed -
5 Sobic.006G156200 - -
6 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
7 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
8 Sobic.002G066350 - -
9 Sobic.003G232800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.007G036200 expressed protein -
12 Sobic.004G254300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
13 Sobic.001G313800 B3 DNA binding domain containing protein, expressed -
14 Sobic.009G019550 - -
15 Sobic.002G346700 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.003G319900 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.1 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
17 Sobic.002G023500 expressed protein -
18 Sobic.004G350500 pectinesterase, putative, expressed K01051: pectinesterase
19 Sobic.010G130900 glycine rich protein family protein, putative, expressed -
20 Sobic.003G175300 expressed protein -


Gene co-expression network
sample Sobic003G091700 Sobic003G091700 Sobic005G131000 Sobic005G131000 Sobic003G091700--Sobic005G131000 Sobic010G048500 Sobic010G048500 Sobic003G091700--Sobic010G048500 Sobic002G268300 Sobic002G268300 Sobic003G091700--Sobic002G268300 Sobic004G000800 Sobic004G000800 Sobic003G091700--Sobic004G000800 Sobic006G156200 Sobic006G156200 Sobic003G091700--Sobic006G156200 Sobic003G231000 Sobic003G231000 Sobic003G091700--Sobic003G231000 Sobic002G205000 Sobic002G205000 Sobic003G091700--Sobic002G205000 Sobic002G066350 Sobic002G066350 Sobic003G091700--Sobic002G066350 Sobic003G232800 Sobic003G232800 Sobic003G091700--Sobic003G232800 Sobic005G131000--Sobic010G048500 Sobic005G131000--Sobic006G156200 Sobic005G131000--Sobic003G091700 Sobic005G131000--Sobic002G066350 Sobic005G131000--Sobic003G231000 Sobic007G036200 Sobic007G036200 Sobic005G131000--Sobic007G036200 Sobic004G254300 Sobic004G254300 Sobic005G131000--Sobic004G254300 Sobic002G023500 Sobic002G023500 Sobic005G131000--Sobic002G023500 Sobic010G130900 Sobic010G130900 Sobic005G131000--Sobic010G130900 Sobic010G048500--Sobic005G131000 Sobic010G048500--Sobic006G156200 Sobic009G019550 Sobic009G019550 Sobic010G048500--Sobic009G019550 Sobic010G048500--Sobic004G254300 Sobic010G048500--Sobic002G023500 Sobic010G048500--Sobic003G231000 Sobic004G056500 Sobic004G056500 Sobic010G048500--Sobic004G056500 Sobic010G048500--Sobic002G066350 Sobic010G048500--Sobic010G130900 Sobic002G268300--Sobic004G000800 Sobic001G313800 Sobic001G313800 Sobic002G268300--Sobic001G313800 Sobic003G238800 Sobic003G238800 Sobic002G268300--Sobic003G238800 Sobic010G220800 Sobic010G220800 Sobic002G268300--Sobic010G220800 Sobic002G268300--Sobic004G254300 Sobic002G426000 Sobic002G426000 Sobic002G268300--Sobic002G426000 Sobic002G344201 Sobic002G344201 Sobic002G268300--Sobic002G344201 Sobic002G268300--Sobic004G056500 Sobic002G268300--Sobic003G231000 Sobic004G000800--Sobic002G268300 Sobic004G000800--Sobic001G313800 Sobic001G123650 Sobic001G123650 Sobic004G000800--Sobic001G123650 Sobic006G156200--Sobic010G048500 Sobic006G239600 Sobic006G239600 Sobic006G156200--Sobic006G239600 Sobic006G156200--Sobic005G131000 Sobic006G006400 Sobic006G006400 Sobic006G156200--Sobic006G006400 Sobic006G156200--Sobic001G123650 Sobic003G231000--Sobic002G066350 Sobic003G231000--Sobic007G036200 Sobic003G231000--Sobic002G023500 Sobic002G346700 Sobic002G346700 Sobic003G231000--Sobic002G346700 Sobic003G231000--Sobic004G254300 Sobic003G231000--Sobic004G056500 Sobic003G231000--Sobic010G130900 Sobic003G231000--Sobic009G019550 Sobic002G258500 Sobic002G258500 Sobic003G231000--Sobic002G258500 Sobic009G243000 Sobic009G243000 Sobic002G205000--Sobic009G243000 Sobic007G033700 Sobic007G033700 Sobic002G205000--Sobic007G033700 Sobic002G078900 Sobic002G078900 Sobic002G205000--Sobic002G078900 Sobic004G237000 Sobic004G237000 Sobic002G205000--Sobic004G237000 Sobic002G205000--Sobic003G091700 Sobic003G319900 Sobic003G319900 Sobic002G205000--Sobic003G319900 Sobic001G137600 Sobic001G137600 Sobic002G205000--Sobic001G137600 Sobic003G006000 Sobic003G006000 Sobic002G205000--Sobic003G006000 Sobic002G205000--Sobic005G131000 Sobic002G066350--Sobic010G130900 Sobic002G066350--Sobic002G023500 Sobic002G066350--Sobic007G036200 Sobic002G066350--Sobic003G231000 Sobic007G014300 Sobic007G014300 Sobic002G066350--Sobic007G014300 Sobic004G316000 Sobic004G316000 Sobic002G066350--Sobic004G316000 Sobic002G066350--Sobic001G123650 Sobic004G316100 Sobic004G316100 Sobic003G232800--Sobic004G316100 Sobic003G175300 Sobic003G175300 Sobic003G232800--Sobic003G175300 Sobic003G369800 Sobic003G369800 Sobic003G232800--Sobic003G369800 Sobic007G035900 Sobic007G035900 Sobic003G232800--Sobic007G035900 Sobic010G237400 Sobic010G237400 Sobic003G232800--Sobic010G237400 Sobic003G175700 Sobic003G175700 Sobic003G232800--Sobic003G175700 Sobic010G144600 Sobic010G144600 Sobic003G232800--Sobic010G144600 Sobic004G277501 Sobic004G277501 Sobic003G232800--Sobic004G277501 Sobic003G232800--Sobic002G023500
Octagon: transcription factors


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