Gene annotation
Transcriptome id Sobic.004G350500.1
Synonym Sb04g037740
Functional annotation pectinesterase, putative, expressed
UniProt C5XW16
Pfam PF01095
Panther DB PTHR31707 PTHR31707:SF49
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT2G45220 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os11g36240.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
2 Sobic.007G036200 expressed protein -
3 Sobic.002G066350 - -
4 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.005G131000 expressed protein -
6 Sobic.004G254300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
7 Sobic.002G023500 expressed protein -
8 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
9 Sobic.009G111301 - -
10 Sobic.002G346700 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.010G130900 glycine rich protein family protein, putative, expressed -
12 Sobic.004G056500 - -
13 Sobic.004G277700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
14 Sobic.001G313800 B3 DNA binding domain containing protein, expressed -
15 Sobic.010G048500 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
16 Sobic.010G154300 expressed protein -
17 Sobic.002G344201 - -
18 Sobic.002G258500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
19 Sobic.009G059932 - -
20 Sobic.009G059800 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G350500 Sobic004G350500 Sobic003G231000 Sobic003G231000 Sobic004G350500--Sobic003G231000 Sobic007G036200 Sobic007G036200 Sobic004G350500--Sobic007G036200 Sobic002G066350 Sobic002G066350 Sobic004G350500--Sobic002G066350 Sobic003G238800 Sobic003G238800 Sobic004G350500--Sobic003G238800 Sobic005G131000 Sobic005G131000 Sobic004G350500--Sobic005G131000 Sobic004G254300 Sobic004G254300 Sobic004G350500--Sobic004G254300 Sobic002G023500 Sobic002G023500 Sobic004G350500--Sobic002G023500 Sobic002G268300 Sobic002G268300 Sobic004G350500--Sobic002G268300 Sobic009G111301 Sobic009G111301 Sobic004G350500--Sobic009G111301 Sobic003G231000--Sobic002G066350 Sobic003G231000--Sobic007G036200 Sobic003G231000--Sobic002G023500 Sobic002G346700 Sobic002G346700 Sobic003G231000--Sobic002G346700 Sobic003G231000--Sobic004G254300 Sobic004G056500 Sobic004G056500 Sobic003G231000--Sobic004G056500 Sobic010G130900 Sobic010G130900 Sobic003G231000--Sobic010G130900 Sobic009G019550 Sobic009G019550 Sobic003G231000--Sobic009G019550 Sobic002G258500 Sobic002G258500 Sobic003G231000--Sobic002G258500 Sobic007G036200--Sobic002G066350 Sobic007G036200--Sobic003G231000 Sobic007G036200--Sobic002G023500 Sobic007G036200--Sobic010G130900 Sobic006G006400 Sobic006G006400 Sobic007G036200--Sobic006G006400 Sobic007G036200--Sobic002G346700 Sobic007G014300 Sobic007G014300 Sobic007G036200--Sobic007G014300 Sobic004G316000 Sobic004G316000 Sobic007G036200--Sobic004G316000 Sobic006G239600 Sobic006G239600 Sobic007G036200--Sobic006G239600 Sobic002G066350--Sobic010G130900 Sobic002G066350--Sobic002G023500 Sobic002G066350--Sobic007G036200 Sobic002G066350--Sobic003G231000 Sobic002G066350--Sobic007G014300 Sobic002G066350--Sobic004G316000 Sobic001G123650 Sobic001G123650 Sobic002G066350--Sobic001G123650 Sobic003G238800--Sobic002G268300 Sobic002G344201 Sobic002G344201 Sobic003G238800--Sobic002G344201 Sobic003G238800--Sobic003G231000 Sobic003G238800--Sobic004G350500 Sobic003G238800--Sobic004G254300 Sobic001G313800 Sobic001G313800 Sobic003G238800--Sobic001G313800 Sobic010G169200 Sobic010G169200 Sobic003G238800--Sobic010G169200 Sobic001G456000 Sobic001G456000 Sobic003G238800--Sobic001G456000 Sobic010G220800 Sobic010G220800 Sobic003G238800--Sobic010G220800 Sobic010G048500 Sobic010G048500 Sobic005G131000--Sobic010G048500 Sobic006G156200 Sobic006G156200 Sobic005G131000--Sobic006G156200 Sobic003G091700 Sobic003G091700 Sobic005G131000--Sobic003G091700 Sobic005G131000--Sobic002G066350 Sobic005G131000--Sobic003G231000 Sobic005G131000--Sobic007G036200 Sobic005G131000--Sobic004G254300 Sobic005G131000--Sobic002G023500 Sobic005G131000--Sobic010G130900 Sobic009G059866 Sobic009G059866 Sobic004G254300--Sobic009G059866 Sobic009G059932 Sobic009G059932 Sobic004G254300--Sobic009G059932 Sobic007G218400 Sobic007G218400 Sobic004G254300--Sobic007G218400 Sobic004G254300--Sobic004G056500 Sobic002G102800 Sobic002G102800 Sobic004G254300--Sobic002G102800 Sobic009G059800 Sobic009G059800 Sobic004G254300--Sobic009G059800 Sobic010G237400 Sobic010G237400 Sobic004G254300--Sobic010G237400 Sobic003G369800 Sobic003G369800 Sobic004G254300--Sobic003G369800 Sobic010G144600 Sobic010G144600 Sobic004G254300--Sobic010G144600 Sobic002G023500--Sobic010G130900 Sobic002G023500--Sobic007G014300 Sobic003G175700 Sobic003G175700 Sobic002G023500--Sobic003G175700 Sobic002G023500--Sobic004G316000 Sobic002G023500--Sobic006G239600 Sobic002G023500--Sobic001G123650 Sobic004G000800 Sobic004G000800 Sobic002G268300--Sobic004G000800 Sobic002G268300--Sobic001G313800 Sobic002G268300--Sobic003G238800 Sobic002G268300--Sobic010G220800 Sobic002G268300--Sobic004G254300 Sobic002G426000 Sobic002G426000 Sobic002G268300--Sobic002G426000 Sobic002G268300--Sobic002G344201 Sobic002G268300--Sobic004G056500 Sobic002G268300--Sobic003G231000 Sobic009G111301--Sobic002G258500 Sobic009G111301--Sobic003G231000 Sobic010G035100 Sobic010G035100 Sobic009G111301--Sobic010G035100 Sobic009G111301--Sobic002G346700 Sobic009G111301--Sobic002G066350 Sobic009G111301--Sobic007G036200 Sobic009G111301--Sobic002G023500 Sobic005G077750 Sobic005G077750 Sobic009G111301--Sobic005G077750 Sobic009G111301--Sobic010G130900
Octagon: transcription factors


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