Gene annotation
Transcriptome id Sobic.009G111301.1
Synonym -
Functional annotation -
UniProt A0A1Z5R330
Pfam -
Panther DB PTHR37380 PTHR37380:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G258500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
2 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
3 Sobic.010G035100 AP2 domain containing protein, expressed -
4 Sobic.002G346700 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.002G066350 - -
6 Sobic.007G036200 expressed protein -
7 Sobic.002G023500 expressed protein -
8 Sobic.005G077750 - -
9 Sobic.010G130900 glycine rich protein family protein, putative, expressed -
10 Sobic.004G316000 DEFL74 - Defensin and Defensin-like DEFL family, expressed -
11 Sobic.009G180700 transcription factor, putative, expressed K14431: transcription factor TGA
12 Sobic.009G019550 - -
13 Sobic.007G014300 DEF6 - Defensin and Defensin-like DEFL family, expressed -
14 Sobic.001G123650 - -
15 Sobic.001G123650 - -
16 Sobic.001G123650 - -
17 Sobic.001G123650 - -
18 Sobic.001G123650 - -
19 Sobic.001G123650 - -
20 Sobic.001G123650 - -


Gene co-expression network
sample Sobic009G111301 Sobic009G111301 Sobic002G258500 Sobic002G258500 Sobic009G111301--Sobic002G258500 Sobic003G231000 Sobic003G231000 Sobic009G111301--Sobic003G231000 Sobic010G035100 Sobic010G035100 Sobic009G111301--Sobic010G035100 Sobic002G346700 Sobic002G346700 Sobic009G111301--Sobic002G346700 Sobic002G066350 Sobic002G066350 Sobic009G111301--Sobic002G066350 Sobic007G036200 Sobic007G036200 Sobic009G111301--Sobic007G036200 Sobic002G023500 Sobic002G023500 Sobic009G111301--Sobic002G023500 Sobic005G077750 Sobic005G077750 Sobic009G111301--Sobic005G077750 Sobic010G130900 Sobic010G130900 Sobic009G111301--Sobic010G130900 Sobic004G316000 Sobic004G316000 Sobic002G258500--Sobic004G316000 Sobic002G258500--Sobic002G023500 Sobic002G258500--Sobic010G130900 Sobic002G258500--Sobic002G346700 Sobic007G014300 Sobic007G014300 Sobic002G258500--Sobic007G014300 Sobic001G123650 Sobic001G123650 Sobic002G258500--Sobic001G123650 Sobic003G231000--Sobic002G066350 Sobic003G231000--Sobic007G036200 Sobic003G231000--Sobic002G023500 Sobic003G231000--Sobic002G346700 Sobic004G254300 Sobic004G254300 Sobic003G231000--Sobic004G254300 Sobic004G056500 Sobic004G056500 Sobic003G231000--Sobic004G056500 Sobic003G231000--Sobic010G130900 Sobic009G019550 Sobic009G019550 Sobic003G231000--Sobic009G019550 Sobic003G231000--Sobic002G258500 Sobic010G035100--Sobic002G258500 Sobic010G035100--Sobic002G346700 Sobic006G006400 Sobic006G006400 Sobic010G035100--Sobic006G006400 Sobic010G035100--Sobic004G316000 Sobic010G035100--Sobic009G019550 Sobic010G035100--Sobic002G023500 Sobic006G239600 Sobic006G239600 Sobic010G035100--Sobic006G239600 Sobic010G035100--Sobic001G123650 Sobic002G346700--Sobic004G316000 Sobic002G346700--Sobic002G258500 Sobic002G346700--Sobic002G023500 Sobic002G346700--Sobic010G130900 Sobic002G346700--Sobic002G066350 Sobic002G346700--Sobic007G014300 Sobic002G346700--Sobic001G123650 Sobic002G066350--Sobic010G130900 Sobic002G066350--Sobic002G023500 Sobic002G066350--Sobic007G036200 Sobic002G066350--Sobic003G231000 Sobic002G066350--Sobic007G014300 Sobic002G066350--Sobic004G316000 Sobic002G066350--Sobic001G123650 Sobic007G036200--Sobic002G066350 Sobic007G036200--Sobic003G231000 Sobic007G036200--Sobic002G023500 Sobic007G036200--Sobic010G130900 Sobic007G036200--Sobic006G006400 Sobic007G036200--Sobic002G346700 Sobic007G036200--Sobic007G014300 Sobic007G036200--Sobic004G316000 Sobic007G036200--Sobic006G239600 Sobic002G023500--Sobic010G130900 Sobic002G023500--Sobic007G014300 Sobic003G175700 Sobic003G175700 Sobic002G023500--Sobic003G175700 Sobic002G023500--Sobic004G316000 Sobic002G023500--Sobic006G239600 Sobic002G023500--Sobic001G123650 Sobic009G180700 Sobic009G180700 Sobic005G077750--Sobic009G180700 Sobic005G077750--Sobic009G111301 Sobic006G199400 Sobic006G199400 Sobic005G077750--Sobic006G199400 Sobic002G344201 Sobic002G344201 Sobic005G077750--Sobic002G344201 Sobic005G077750--Sobic010G035100 Sobic005G077750--Sobic002G258500 Sobic002G346800 Sobic002G346800 Sobic005G077750--Sobic002G346800 Sobic005G077750--Sobic009G019550 Sobic007G125800 Sobic007G125800 Sobic005G077750--Sobic007G125800 Sobic010G130900--Sobic002G023500 Sobic010G130900--Sobic007G014300 Sobic010G130900--Sobic006G239600 Sobic010G130900--Sobic001G123650
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.