Gene annotation
| Transcriptome id | Sobic.008G189600.1 |
|---|---|
| Synonym | Sb08g023010 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) nodulin, putative, expressed |
| UniProt | C5YT14 |
| Pfam | PF06813 |
| Panther DB | PTHR21576 PTHR21576:SF24 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G39210 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os12g44070.1 : nodulin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a045264 , Zm00025a015948 , Zm00025a016051 , Zm00025a007605 , Zm00025a008596 |
| Brachypodium | PNT76871 , KQJ86716 , KQK12657 , KQK13777 , KQJ96963 , KQK20512 |
| Barley | HORVU3Hr1G086040.1 , HORVU3Hr1G086040.3 , HORVU3Hr1G086040.7 , HORVU3Hr1G086040.6 , HORVU3Hr1G086040.5 , HORVU3Hr1G086040.4 , HORVU1Hr1G019710.1 , HORVU7Hr1G110840.5 , HORVU5Hr1G106960.8 , HORVU5Hr1G106960.5 , HORVU5Hr1G106960.4 , HORVU5Hr1G106960.7 , HORVU5Hr1G106960.6 , HORVU5Hr1G106960.1 , HORVU5Hr1G106960.3 , HORVU5Hr1G106960.2 , HORVU3Hr1G086040.2 , HORVU7Hr1G110840.4 , HORVU7Hr1G110840.3 , HORVU7Hr1G110840.2 , HORVU7Hr1G110840.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G189600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G300701 | - | - |
| 2 | Sobic.001G417000 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11252: histone H2B |
| 3 | Sobic.003G235800 | "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed | K13947: auxin efflux carrier family protein |
| 4 | Sobic.003G301200 | expressed protein | - |
| 5 | Sobic.007G081300 | peptide transporter PTR2, putative, expressed | - |
| 6 | Sobic.001G416900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 7 | Sobic.004G155900 | heavy metal-associated domain containing protein, expressed | - |
| 8 | Sobic.002G416000 | pectinesterase, putative, expressed | K01051: pectinesterase |
| 9 | Sobic.001G416800 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 10 | Sobic.004G066000 | expressed protein | - |
| 11 | Sobic.006G189100 | DNAJ heat shock N-terminal domain-containing protein, putative, expressed | - |
| 12 | Sobic.010G189800 | microtubule associated protein, putative, expressed | K16732: protein regulator of cytokinesis 1 |
| 13 | Sobic.002G059200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 14 | Sobic.003G286100 | mitochondrial import receptor subunit TOM7-1, putative, expressed | K17771: mitochondrial import receptor subunit TOM7 |
| 15 | Sobic.001G158000 | selT/selW/selH selenoprotein domain containing protein, expressed | - |
| 16 | Sobic.002G056300 | AT hook-containing DNA-binding protein, putative, expressed | K11275: histone H1/5 |
| 17 | Sobic.004G265400 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11252: histone H2B |
| 18 | Sobic.001G180300 | expressed protein | - |
| 19 | Sobic.001G295900 | AGC_PVPK_like_kin82y.17 - ACG kinases include homologs to PKA, PKG and PKC, expressed | - |
| 20 | Sobic.004G192700 | dynein light chain type 1 family protein, putative, expressed | K10418: dynein light chain LC8-type |
Gene co-expression network
Octagon: transcription factors
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