Gene annotation
Transcriptome id Sobic.005G131900.1
Synonym Sb05g019530, ATICE1, SCRM, ICE1
Functional annotation inducer of CBF expression 1, putative, expressed
UniProt C5Y390
Pfam PF00010
Panther DB PTHR31945 PTHR31945:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26744 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os11g32100.1 : inducer of CBF expression 1, putative, expressed
MaizeGDB (Corn) Zm00025a015678 , Zm00025a029825
Brachypodium KQJ88406 , KQJ88405 , KQK11326
Barley HORVU5Hr1G023670.32 , HORVU5Hr1G023670.37 , HORVU5Hr1G023670.38 , HORVU4Hr1G052500.1 , HORVU4Hr1G052500.2 , HORVU4Hr1G052500.3 , HORVU4Hr1G052500.4 , HORVU4Hr1G052500.5 , HORVU4Hr1G052500.6 , HORVU4Hr1G052500.7 , HORVU4Hr1G052500.8 , HORVU4Hr1G052500.9 , HORVU3Hr1G096460.2 , HORVU3Hr1G096460.3 , HORVU7Hr1G052820.6 , HORVU4Hr1G052500.19 , HORVU7Hr1G062400.10 , HORVU7Hr1G062400.13 , HORVU7Hr1G062400.12 , HORVU7Hr1G062400.15 , HORVU7Hr1G062400.14 , HORVU7Hr1G062400.17 , HORVU7Hr1G062400.16 , HORVU7Hr1G062400.18 , HORVU4Hr1G052500.14 , HORVU3Hr1G034540.16 , HORVU3Hr1G034540.10 , HORVU3Hr1G034540.26 , HORVU3Hr1G034540.27 , HORVU3Hr1G034540.24 , HORVU3Hr1G034540.25 , HORVU3Hr1G034540.22 , HORVU3Hr1G034540.23 , HORVU3Hr1G034540.20 , HORVU3Hr1G034540.21 , HORVU3Hr1G034540.28 , HORVU3Hr1G034540.29 , HORVU5Hr1G023670.26 , HORVU5Hr1G023670.25 , HORVU5Hr1G023670.22 , HORVU5Hr1G023670.20 , HORVU5Hr1G023670.21 , HORVU5Hr1G023670.53 , HORVU5Hr1G023670.51 , HORVU5Hr1G023670.54 , HORVU3Hr1G034540.19 , HORVU3Hr1G034540.18 , HORVU3Hr1G034540.17 , HORVU3Hr1G096460.4 , HORVU3Hr1G034540.15 , HORVU3Hr1G034540.14 , HORVU3Hr1G034540.13 , HORVU3Hr1G034540.12 , HORVU3Hr1G034540.11 , HORVU3Hr1G096460.5 , HORVU3Hr1G096460.6 , HORVU3Hr1G096460.7 , HORVU3Hr1G034540.7 , HORVU3Hr1G034540.6 , HORVU3Hr1G034540.5 , HORVU3Hr1G034540.4 , HORVU3Hr1G034540.3 , HORVU3Hr1G034540.2 , HORVU3Hr1G034540.1 , HORVU3Hr1G034540.8 , HORVU5Hr1G023670.7 , HORVU5Hr1G023670.6 , HORVU5Hr1G023670.5 , HORVU5Hr1G023670.4 , HORVU5Hr1G023670.3 , HORVU5Hr1G023670.9 , HORVU5Hr1G023670.19 , HORVU5Hr1G023670.18 , HORVU5Hr1G023670.17 , HORVU5Hr1G023670.16 , HORVU5Hr1G023670.14 , HORVU5Hr1G023670.13 , HORVU5Hr1G023670.12 , HORVU5Hr1G023670.11 , HORVU5Hr1G023670.10 , HORVU7Hr1G052820.17 , HORVU7Hr1G052820.14 , HORVU7Hr1G052820.13 , HORVU7Hr1G052820.10 , HORVU7Hr1G052820.11 , HORVU4Hr1G052500.10 , HORVU7Hr1G052820.19 , HORVU5Hr1G023670.42 , HORVU5Hr1G023670.43 , HORVU5Hr1G023670.49 , HORVU7Hr1G052820.29 , HORVU7Hr1G052820.24 , HORVU7Hr1G052820.23 , HORVU7Hr1G052820.22 , HORVU7Hr1G052820.21 , HORVU7Hr1G052820.20 , HORVU7Hr1G074490.5 , HORVU7Hr1G074490.4 , HORVU7Hr1G074490.6 , HORVU7Hr1G074490.3 , HORVU7Hr1G074490.2 , HORVU7Hr1G052820.4 , HORVU7Hr1G052820.5 , HORVU7Hr1G052820.1 , HORVU7Hr1G052820.2 , HORVU7Hr1G052820.3 , HORVU7Hr1G052820.8 , HORVU7Hr1G052820.9 , HORVU3Hr1G034540.31 , HORVU3Hr1G034540.30 , HORVU3Hr1G034540.32 , HORVU7Hr1G062400.9 , HORVU7Hr1G052820.31 , HORVU7Hr1G052820.32 , HORVU7Hr1G052820.33 , HORVU7Hr1G062400.5 , HORVU7Hr1G062400.4 , HORVU7Hr1G062400.7 , HORVU7Hr1G062400.1 , HORVU7Hr1G062400.3 , HORVU7Hr1G062400.2 , HORVU7Hr1G062400.8
Wheat TraesCS3B02G476000 , TraesCS3B02G476000 , TraesCS4D02G051600 , TraesCS4D02G051600 , TraesCS7A02G543300 , TraesCS4A02G263300 , TraesCS4A02G263300 , TraesCS7D02G308300 , TraesCS7B02G211600 , TraesCS3A02G442200 , TraesCS7D02G529200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G131900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G340350 - -
2 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
3 Sobic.004G113900 polygalacturonase, putative, expressed -
4 Sobic.003G325400 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
5 Sobic.009G203200 pectinesterase, putative, expressed K01051: pectinesterase
6 Sobic.004G059100 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed -
7 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.004G329000 OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
9 Sobic.007G019600 expressed protein -
10 Sobic.001G230400 pectate lyase precursor, putative, expressed K01728: pectate lyase
11 Sobic.003G100200 TOO MANY MOUTHS precursor, putative, expressed -
12 Sobic.005G129600 OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
13 Sobic.009G254400 polygalacturonase inhibitor 1 precursor, putative, expressed -
14 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
15 Sobic.009G066500 DUF581 domain containing protein, expressed -
16 Sobic.002G366000 X8 domain containing protein, expressed -
17 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
18 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
19 Sobic.006G177000 cytochrome P450, putative, expressed K15398: fatty acid omega-hydroxylase
20 Sobic.001G267800 thaumatin-like protein 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic005G131900 Sobic005G131900 Sobic002G340350 Sobic002G340350 Sobic005G131900--Sobic002G340350 Sobic002G035500 Sobic002G035500 Sobic005G131900--Sobic002G035500 Sobic004G113900 Sobic004G113900 Sobic005G131900--Sobic004G113900 Sobic003G325400 Sobic003G325400 Sobic005G131900--Sobic003G325400 Sobic009G203200 Sobic009G203200 Sobic005G131900--Sobic009G203200 Sobic004G059100 Sobic004G059100 Sobic005G131900--Sobic004G059100 Sobic001G470200 Sobic001G470200 Sobic005G131900--Sobic001G470200 Sobic004G329000 Sobic004G329000 Sobic005G131900--Sobic004G329000 Sobic007G019600 Sobic007G019600 Sobic005G131900--Sobic007G019600 Sobic006G163650 Sobic006G163650 Sobic002G340350--Sobic006G163650 Sobic001G247000 Sobic001G247000 Sobic002G340350--Sobic001G247000 Sobic003G284500 Sobic003G284500 Sobic002G340350--Sobic003G284500 Sobic002G340350--Sobic005G131900 Sobic009G254400 Sobic009G254400 Sobic002G340350--Sobic009G254400 Sobic006G245200 Sobic006G245200 Sobic002G340350--Sobic006G245200 Sobic010G014900 Sobic010G014900 Sobic002G340350--Sobic010G014900 Sobic007G153300 Sobic007G153300 Sobic002G340350--Sobic007G153300 Sobic007G158400 Sobic007G158400 Sobic002G340350--Sobic007G158400 Sobic002G035500--Sobic007G019600 Sobic005G129600 Sobic005G129600 Sobic002G035500--Sobic005G129600 Sobic002G035500--Sobic004G113900 Sobic010G209800 Sobic010G209800 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic003G282600 Sobic003G282600 Sobic002G035500--Sobic003G282600 Sobic009G257900 Sobic009G257900 Sobic002G035500--Sobic009G257900 Sobic004G237300 Sobic004G237300 Sobic002G035500--Sobic004G237300 Sobic007G162000 Sobic007G162000 Sobic002G035500--Sobic007G162000 Sobic004G113900--Sobic005G129600 Sobic003G432000 Sobic003G432000 Sobic004G113900--Sobic003G432000 Sobic004G113900--Sobic002G035500 Sobic004G113900--Sobic009G257900 Sobic001G267800 Sobic001G267800 Sobic004G113900--Sobic001G267800 Sobic002G260600 Sobic002G260600 Sobic004G113900--Sobic002G260600 Sobic007G211200 Sobic007G211200 Sobic004G113900--Sobic007G211200 Sobic001G247700 Sobic001G247700 Sobic004G113900--Sobic001G247700 Sobic004G115700 Sobic004G115700 Sobic004G113900--Sobic004G115700 Sobic009G070500 Sobic009G070500 Sobic003G325400--Sobic009G070500 Sobic003G325400--Sobic001G470200 Sobic002G412400 Sobic002G412400 Sobic003G325400--Sobic002G412400 Sobic001G199400 Sobic001G199400 Sobic003G325400--Sobic001G199400 Sobic001G083500 Sobic001G083500 Sobic003G325400--Sobic001G083500 Sobic001G074000 Sobic001G074000 Sobic003G325400--Sobic001G074000 Sobic007G165800 Sobic007G165800 Sobic003G325400--Sobic007G165800 Sobic008G008100 Sobic008G008100 Sobic003G325400--Sobic008G008100 Sobic001G493900 Sobic001G493900 Sobic003G325400--Sobic001G493900 Sobic009G203200--Sobic002G035500 Sobic009G203200--Sobic007G162000 Sobic008G020500 Sobic008G020500 Sobic009G203200--Sobic008G020500 Sobic009G203200--Sobic007G019600 Sobic009G203200--Sobic004G113900 Sobic009G203200--Sobic005G129600 Sobic009G203200--Sobic010G209800 Sobic009G203200--Sobic005G131900 Sobic009G203200--Sobic003G432000 Sobic009G163700 Sobic009G163700 Sobic004G059100--Sobic009G163700 Sobic010G042200 Sobic010G042200 Sobic004G059100--Sobic010G042200 Sobic004G059100--Sobic001G247000 Sobic004G059100--Sobic005G131900 Sobic006G278800 Sobic006G278800 Sobic004G059100--Sobic006G278800 Sobic004G059100--Sobic002G035500 Sobic006G108000 Sobic006G108000 Sobic004G059100--Sobic006G108000 Sobic002G394200 Sobic002G394200 Sobic004G059100--Sobic002G394200 Sobic005G017100 Sobic005G017100 Sobic004G059100--Sobic005G017100 Sobic004G357000 Sobic004G357000 Sobic001G470200--Sobic004G357000 Sobic004G317200 Sobic004G317200 Sobic001G470200--Sobic004G317200 Sobic010G020600 Sobic010G020600 Sobic001G470200--Sobic010G020600 Sobic007G032100 Sobic007G032100 Sobic001G470200--Sobic007G032100 Sobic001G470200--Sobic007G165800 Sobic004G274600 Sobic004G274600 Sobic001G470200--Sobic004G274600 Sobic003G089300 Sobic003G089300 Sobic001G470200--Sobic003G089300 Sobic008G097700 Sobic008G097700 Sobic001G470200--Sobic008G097700 Sobic001G434100 Sobic001G434100 Sobic001G470200--Sobic001G434100 Sobic004G329000--Sobic009G257900 Sobic003G351900 Sobic003G351900 Sobic004G329000--Sobic003G351900 Sobic004G329000--Sobic004G113900 Sobic003G251700 Sobic003G251700 Sobic004G329000--Sobic003G251700 Sobic006G142500 Sobic006G142500 Sobic004G329000--Sobic006G142500 Sobic004G164700 Sobic004G164700 Sobic004G329000--Sobic004G164700 Sobic008G190000 Sobic008G190000 Sobic004G329000--Sobic008G190000 Sobic006G050900 Sobic006G050900 Sobic004G329000--Sobic006G050900 Sobic001G452900 Sobic001G452900 Sobic004G329000--Sobic001G452900 Sobic007G019600--Sobic002G035500 Sobic007G019600--Sobic004G237300 Sobic001G494300 Sobic001G494300 Sobic007G019600--Sobic001G494300 Sobic007G019600--Sobic003G282600 Sobic006G155900 Sobic006G155900 Sobic007G019600--Sobic006G155900 Sobic007G019600--Sobic007G162000 Sobic010G202100 Sobic010G202100 Sobic007G019600--Sobic010G202100 Sobic007G019600--Sobic005G129600 Sobic009G025400 Sobic009G025400 Sobic007G019600--Sobic009G025400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.