Gene annotation
Transcriptome id Sobic.002G420000.2,Sobic.002G420000.1
Synonym RECQ4B, RECQL4B, ATRECQ4B, Sb02g043160
Functional annotation -
UniProt C5X5N6 , C5X5P0
Pfam PF16124 PF00570 PF14493 PF00271 PF00270 PF09382 PF16124 PF00570 PF14493 PF00271 PF09382
Panther DB PTHR13710 PTHR13710:SF87
NCBI CDD KOG0353; ATP-dependent DNA helicase
KEGG Orthology K03654; ATP-dependent DNA helicase RecQ
Gene Ontology GO:0005622; intracellular GO:0003676nucleic acid binding GO:0006281DNA repair GO:0006260DNA replication GO:0005622intracellular GO:0003676nucleic acid binding GO:0005524ATP binding GO:0006281DNA repair GO:0006260DNA replication


Orthologs (automatic annotation)
TAIR AT1G60930 : RECQ helicase L4B
RAP-DB (Rice) LOC_Os07g48360.1 : helicase conserved C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049179
Brachypodium KQK14606
Barley HORVU0Hr1G002110.2 , HORVU0Hr1G002110.1
Wheat TraesCS2D02G102800 , TraesCS2B02G120600 , TraesCS2A02G103300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G394200 expressed protein K15711: SMARCA3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3
2 Sobic.001G295400 protein kinase domain containing protein, expressed K02214: cell division control protein 7
3 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
4 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
5 Sobic.008G131900 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@resistance protein LR10, putative, expressed -
6 Sobic.010G222800 expressed protein -
7 Sobic.002G286632 - -
8 Sobic.002G286100 DUF292 domain containing protein, expressed -
9 Sobic.002G112000 protein binding protein, putative, expressed -
10 Sobic.003G423800 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
11 Sobic.003G013800 expressed protein -
12 Sobic.001G407100 PHD finger family protein, putative, expressed -
13 Sobic.004G047800 growth regulator related protein, putative, expressed -
14 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
15 Sobic.010G257500 expressed protein -
16 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
17 Sobic.006G081700 - -
18 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
19 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
20 Sobic.008G180200 expressed protein -


Gene co-expression network
sample Sobic002G420000 Sobic002G420000 Sobic002G394200 Sobic002G394200 Sobic002G420000--Sobic002G394200 Sobic001G295400 Sobic001G295400 Sobic002G420000--Sobic001G295400 Sobic007G008300 Sobic007G008300 Sobic002G420000--Sobic007G008300 Sobic010G030000 Sobic010G030000 Sobic002G420000--Sobic010G030000 Sobic008G131900 Sobic008G131900 Sobic002G420000--Sobic008G131900 Sobic010G222800 Sobic010G222800 Sobic002G420000--Sobic010G222800 Sobic002G286632 Sobic002G286632 Sobic002G420000--Sobic002G286632 Sobic002G286100 Sobic002G286100 Sobic002G420000--Sobic002G286100 Sobic002G112000 Sobic002G112000 Sobic002G420000--Sobic002G112000 Sobic009G025400 Sobic009G025400 Sobic002G394200--Sobic009G025400 Sobic004G108400 Sobic004G108400 Sobic002G394200--Sobic004G108400 Sobic002G394200--Sobic002G420000 Sobic002G394200--Sobic007G008300 Sobic009G257900 Sobic009G257900 Sobic002G394200--Sobic009G257900 Sobic002G394200--Sobic001G295400 Sobic001G494300 Sobic001G494300 Sobic002G394200--Sobic001G494300 Sobic006G112800 Sobic006G112800 Sobic002G394200--Sobic006G112800 Sobic005G056800 Sobic005G056800 Sobic002G394200--Sobic005G056800 Sobic001G295400--Sobic007G008300 Sobic001G377700 Sobic001G377700 Sobic001G295400--Sobic001G377700 Sobic005G110535 Sobic005G110535 Sobic001G295400--Sobic005G110535 Sobic001G295400--Sobic004G108400 Sobic002G290000 Sobic002G290000 Sobic001G295400--Sobic002G290000 Sobic003G183700 Sobic003G183700 Sobic001G295400--Sobic003G183700 Sobic001G295400--Sobic002G420000 Sobic003G320300 Sobic003G320300 Sobic001G295400--Sobic003G320300 Sobic006G195500 Sobic006G195500 Sobic001G295400--Sobic006G195500 Sobic007G008300--Sobic001G295400 Sobic009G172950 Sobic009G172950 Sobic007G008300--Sobic009G172950 Sobic007G008300--Sobic004G108400 Sobic001G105800 Sobic001G105800 Sobic007G008300--Sobic001G105800 Sobic007G008300--Sobic003G320300 Sobic009G184200 Sobic009G184200 Sobic007G008300--Sobic009G184200 Sobic007G007800 Sobic007G007800 Sobic007G008300--Sobic007G007800 Sobic007G008300--Sobic001G377700 Sobic003G055600 Sobic003G055600 Sobic007G008300--Sobic003G055600 Sobic010G038200 Sobic010G038200 Sobic010G030000--Sobic010G038200 Sobic009G136000 Sobic009G136000 Sobic010G030000--Sobic009G136000 Sobic010G030000--Sobic008G131900 Sobic010G009700 Sobic010G009700 Sobic010G030000--Sobic010G009700 Sobic010G243100 Sobic010G243100 Sobic010G030000--Sobic010G243100 Sobic005G210500 Sobic005G210500 Sobic010G030000--Sobic005G210500 Sobic003G216600 Sobic003G216600 Sobic010G030000--Sobic003G216600 Sobic001G486600 Sobic001G486600 Sobic010G030000--Sobic001G486600 Sobic010G030000--Sobic010G222800 Sobic002G173400 Sobic002G173400 Sobic008G131900--Sobic002G173400 Sobic008G131900--Sobic010G038200 Sobic008G131900--Sobic009G136000 Sobic010G024000 Sobic010G024000 Sobic008G131900--Sobic010G024000 Sobic008G131900--Sobic010G030000 Sobic008G131900--Sobic001G486600 Sobic002G052800 Sobic002G052800 Sobic008G131900--Sobic002G052800 Sobic008G131900--Sobic010G222800 Sobic006G193100 Sobic006G193100 Sobic008G131900--Sobic006G193100 Sobic003G343200 Sobic003G343200 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic003G411700 Sobic003G411700 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic008G070700 Sobic008G070700 Sobic010G222800--Sobic008G070700 Sobic002G271400 Sobic002G271400 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic010G222800--Sobic008G131900 Sobic009G168200 Sobic009G168200 Sobic002G286632--Sobic009G168200 Sobic006G081700 Sobic006G081700 Sobic002G286632--Sobic006G081700 Sobic009G163400 Sobic009G163400 Sobic002G286632--Sobic009G163400 Sobic005G034200 Sobic005G034200 Sobic002G286632--Sobic005G034200 Sobic008G141900 Sobic008G141900 Sobic002G286632--Sobic008G141900 Sobic003G005500 Sobic003G005500 Sobic002G286632--Sobic003G005500 Sobic001G010500 Sobic001G010500 Sobic002G286632--Sobic001G010500 Sobic002G286632--Sobic002G173400 Sobic008G180200 Sobic008G180200 Sobic002G286632--Sobic008G180200 Sobic002G286100--Sobic004G108400 Sobic009G084100 Sobic009G084100 Sobic002G286100--Sobic009G084100 Sobic002G286100--Sobic003G320300 Sobic005G157300 Sobic005G157300 Sobic002G286100--Sobic005G157300 Sobic002G286100--Sobic001G295400 Sobic009G225500 Sobic009G225500 Sobic002G286100--Sobic009G225500 Sobic001G452900 Sobic001G452900 Sobic002G286100--Sobic001G452900 Sobic002G286100--Sobic007G008300 Sobic002G286100--Sobic009G172950 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G317700 Sobic002G317700 Sobic002G112000--Sobic002G317700 Sobic002G112000--Sobic008G070700 Sobic002G112000--Sobic010G222800 Sobic003G129500 Sobic003G129500 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200
Octagon: transcription factors


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